View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4492_low_1 (Length: 884)
Name: NF4492_low_1
Description: NF4492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4492_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 568 - 871
Target Start/End: Complemental strand, 45595579 - 45595276
Alignment:
| Q |
568 |
gtttgaactggtttcttatttaatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaat |
667 |
Q |
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| T |
45595579 |
gtttgaactggtttcttatttaatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaat |
45595480 |
T |
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| Q |
668 |
ggctgctcttgactatattgtatctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttctt |
767 |
Q |
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| T |
45595479 |
ggctgctcttgactatattgtatctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttctt |
45595380 |
T |
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| Q |
768 |
gggagaggaagaaccatttctccagataggtgagcctctctttctctcctaagcagatgaattaattttgtaattcattatccctaatgtttgcctttgc |
867 |
Q |
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| T |
45595379 |
gggagaggaagaaccatttctccagataggtgagcctctctttctctcctaagcagatgaattaattttgtaattcattatccctaatgtttgcctttgc |
45595280 |
T |
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| Q |
868 |
ttct |
871 |
Q |
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|||| |
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| T |
45595279 |
ttct |
45595276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 222 - 397
Target Start/End: Complemental strand, 54706234 - 54706053
Alignment:
| Q |
222 |
ggtggtggtcggtgagagaaggaagaagaggattactg----tggtggtggaagtaaatgtttgtgagagag--tgaaggaagagagtataaattgacaa |
315 |
Q |
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| T |
54706234 |
ggtggtggtcggtgagagaaggaagaagaggattactgctggtggtggtggaagtaaatgcctgtgagagagagtgaaggaagagagtgtaaattgacag |
54706135 |
T |
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| Q |
316 |
aattaccctcctaatacaattaataaaaaatgccaaattggaggtgtagggggtggtttgccagatattgttgtatacgtat |
397 |
Q |
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| T |
54706134 |
aattttcctcctaatacaatttgtaaaaaatgccaaatgagaggtgtacaaggtggtttgctacctaaggttgtatacgtat |
54706053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 36755101 - 36755035
Alignment:
| Q |
312 |
acaaaattaccctcctaatacaattaataaaaaatgccaaattggaggtgtagggggtggtttgcca |
378 |
Q |
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| T |
36755101 |
acaaaattaccatcctaatacaattaataaaaaatgttaaatgggaggtgtataaggtggtttgcca |
36755035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 603 - 769
Target Start/End: Complemental strand, 27149117 - 27148951
Alignment:
| Q |
603 |
taatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtg |
702 |
Q |
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|||| |||||||| ||||||||| ||||| ||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||||| | || |||| |
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| T |
27149117 |
taatttcaggaaacgttggcatccattgaggagcttgaacccttttttaatcatgcttctcaaatggctgctcttgactatattgtatctatcgagagtg |
27149018 |
T |
|
| Q |
703 |
atgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgg |
769 |
Q |
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|||||||| ||| ||||| |||| |||||||| | || |||||||| ||||| ||||||||||| |
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| T |
27149017 |
atgtatttataccctcttattctggaaacatggcaagggctgttgaaggtcatcgccgttttcttgg |
27148951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 435
Target Start/End: Complemental strand, 42211927 - 42211898
Alignment:
| Q |
406 |
caaaaagtagtgaaaactgaaagtgaatag |
435 |
Q |
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| T |
42211927 |
caaaaagtagtgaaaactgaaagtgaatag |
42211898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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