View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4492_low_2 (Length: 732)
Name: NF4492_low_2
Description: NF4492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4492_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 572 - 709
Target Start/End: Original strand, 31621230 - 31621370
Alignment:
| Q |
572 |
tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---acc |
668 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31621230 |
tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactacc |
31621329 |
T |
|
| Q |
669 |
acaactctcttctctgtttcctccccagaatggatacttga |
709 |
Q |
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| T |
31621330 |
acaacgctcttctctgttatttccccagaatggatacttga |
31621370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 572 - 709
Target Start/End: Original strand, 31636225 - 31636365
Alignment:
| Q |
572 |
tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---acc |
668 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31636225 |
tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactacc |
31636324 |
T |
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| Q |
669 |
acaactctcttctctgtttcctccccagaatggatacttga |
709 |
Q |
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| T |
31636325 |
acaacgctcttctctgttatttccccagaatggatacttga |
31636365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 587 - 663
Target Start/End: Original strand, 31616499 - 31616575
Alignment:
| Q |
587 |
gaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
663 |
Q |
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| T |
31616499 |
gaatacggtatttggcgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
31616575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 583 - 711
Target Start/End: Original strand, 31606570 - 31606704
Alignment:
| Q |
583 |
tcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatc---agaaacaccacaactctct- |
678 |
Q |
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|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || | | |
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| T |
31606570 |
tcaagaatgcggtatttgacgtcgttgatatttatctttggaacactttcttcgcatgtaagatccatattaggatcggaagaaacaccaccacaatatt |
31606669 |
T |
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| Q |
679 |
--tctctgtttcctccccagaatggatacttgatg |
711 |
Q |
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| T |
31606670 |
tatctctattttctccccagaatggatacttgatg |
31606704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 572 - 709
Target Start/End: Original strand, 31610389 - 31610529
Alignment:
| Q |
572 |
tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggat---cagaaacacc |
668 |
Q |
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||||||||||||||||||||||||||||||| ||| || |||||||| || |||||| |||||||| |||||||| ||||||| |||||||||| |
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| T |
31610389 |
tattgtcccattcaagaatacggtatttgaccaaattaattgttatcttagggacacttccttcgcatacgagctccatcttaggatcaccagaaacacc |
31610488 |
T |
|
| Q |
669 |
acaactctcttctctgtttcctccccagaatggatacttga |
709 |
Q |
| |
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|||| || ||||||||||||||||||| | |||||||||| |
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| T |
31610489 |
acaatacttttctctgtttcctccccagtacggatacttga |
31610529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 573 - 704
Target Start/End: Original strand, 31597365 - 31597496
Alignment:
| Q |
573 |
attgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacaccacaa |
672 |
Q |
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||||| ||||||||||||||| ||||| ||| |||||| |||||||| || || || ||||||||||||||| |||||||||||| |||||||||||| |
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| T |
31597365 |
attgttccattcaagaatacgatatttcacgaaattgatcgttatcttcgggacttttccttcgcatgtaagcttcatattaggatcggaaacaccacaa |
31597464 |
T |
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| Q |
673 |
ctctcttctctgtttcctccccagaatggata |
704 |
Q |
| |
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| | |||| ||| |||||||||||||||| |
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| T |
31597465 |
taatttcctctattttctccccagaatggata |
31597496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 222 - 397
Target Start/End: Complemental strand, 54706234 - 54706053
Alignment:
| Q |
222 |
ggtggtggtcggtgagagaaggaagaagaggattactg----tggtggtggaagtaaatgtttgtgagagag--tgaaggaagagagtataaattgacaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |
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| T |
54706234 |
ggtggtggtcggtgagagaaggaagaagaggattactgctggtggtggtggaagtaaatgcctgtgagagagagtgaaggaagagagtgtaaattgacag |
54706135 |
T |
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| Q |
316 |
aattaccctcctaatacaattaataaaaaatgccaaattggaggtgtagggggtggtttgccagatattgttgtatacgtat |
397 |
Q |
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| T |
54706134 |
aattttcctcctaatacaatttgtaaaaaatgccaaatgagaggtgtacaaggtggtttgctacctaaggttgtatacgtat |
54706053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 36755101 - 36755035
Alignment:
| Q |
312 |
acaaaattaccctcctaatacaattaataaaaaatgccaaattggaggtgtagggggtggtttgcca |
378 |
Q |
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||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||||| |
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| T |
36755101 |
acaaaattaccatcctaatacaattaataaaaaatgttaaatgggaggtgtataaggtggtttgcca |
36755035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 435
Target Start/End: Complemental strand, 42211927 - 42211898
Alignment:
| Q |
406 |
caaaaagtagtgaaaactgaaagtgaatag |
435 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42211927 |
caaaaagtagtgaaaactgaaagtgaatag |
42211898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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