View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4492_low_3 (Length: 370)
Name: NF4492_low_3
Description: NF4492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4492_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 61 - 352
Target Start/End: Original strand, 25492265 - 25492558
Alignment:
| Q |
61 |
tggacatcatccaagcttcgaagagaaaactagagaaaccaataattaggaagtacaaacctattacgnnnnnnnnnntctagcctaataaagttaggca |
160 |
Q |
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| T |
25492265 |
tggacataatccaaacttcgaagagaaaactaaagaaaccaataattaggaagttcaaacctattacgaaaaaaaaaatctagcctaataaagttaggca |
25492364 |
T |
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| Q |
161 |
ttagattccctcaagtaaaa-catttagaaaagacccaaaaaaggtttgttagcacaatagtttccatcttgaaatacaa-gagaaacccaagagcgaag |
258 |
Q |
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| T |
25492365 |
ttggattccctcaagtaaaaacatttagaaaagacccaaaagaggtttgttggctcaatagtttccatcttgaaatacaaagagaaacccgagagcgaag |
25492464 |
T |
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| Q |
259 |
tggatgtaaaataaatgcacttctgccaatcgttccaaaggtgccgagaagagtggcacttcaaccaaatactatgccaactttggctccgagc |
352 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
25492465 |
aggatgtaaaataaatgcaattctgccaatcgttccaaaggtgccgagaagagtggcacttcaaccaatgactatgccaacttttgttccgagc |
25492558 |
T |
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