View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4492_low_9 (Length: 238)
Name: NF4492_low_9
Description: NF4492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4492_low_9 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 34780916 - 34780695
Alignment:
| Q |
17 |
aacaaagacaatcagaagaaacttaccacaacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780916 |
aacaaagacaatcagaagaaacttaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaag |
34780817 |
T |
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| Q |
117 |
tgtcaagaaaaacaacattctgctcgccctctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgatagg |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780816 |
tgtcaagaaaaacaacattctgctcgccatctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgatagg |
34780717 |
T |
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| Q |
217 |
atcatacttattgaaaatctcc |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
34780716 |
atcatacttattgaaaatctcc |
34780695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 34763211 - 34763417
Alignment:
| Q |
32 |
aagaaacttaccacaacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaa |
131 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763211 |
aagaaactcaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaa |
34763310 |
T |
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| Q |
132 |
cattctgctcgccctctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaa |
231 |
Q |
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| T |
34763311 |
cattctgctcgccttctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaa |
34763410 |
T |
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| Q |
232 |
aatctcc |
238 |
Q |
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||||||| |
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| T |
34763411 |
aatctcc |
34763417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 34755220 - 34755440
Alignment:
| Q |
17 |
aacaaagacaatcagaagaaacttaccacaacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaag |
116 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||| |||||||||||| |
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| T |
34755220 |
aacaaagacaattagaataaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagcaaag |
34755319 |
T |
|
| Q |
117 |
tgtcaagaaaaacaacattctgctcgccctctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgatagg |
216 |
Q |
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| ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755320 |
tatcaagaaaaactacactctgctcgccctctatgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgatagg |
34755419 |
T |
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| Q |
217 |
atcatacttattgaaaatctc |
237 |
Q |
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||||||||||||||||||||| |
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| T |
34755420 |
atcatacttattgaaaatctc |
34755440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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