View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493-Insertion-1 (Length: 1019)
Name: NF4493-Insertion-1
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-164; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-164
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 6973644 - 6973238
Alignment:
| Q |
8 |
agattaaattacaaagttcgatctaataataacctacttcactatcattccnnnnnnnnta--tatgcatcaagaagaacacatgagatgttcttatttg |
105 |
Q |
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| T |
6973644 |
agattaaattacaaagttcgatctaataataacctacttcactatcattccaaaaaaaaaaaatatgcatcaagaagaacacatgagatgttcttttttg |
6973545 |
T |
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| Q |
106 |
tttagagattctcacaaaatcacattctaacaaaagatacttcacttatatgttggattcatgaccaaaatttccgtttatatattggtaggtgtagtgt |
205 |
Q |
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| T |
6973544 |
tttagagattctcacaaaatcacattctaacaaaagatactttacttatatgtcggattcaagaccaaaatttccatttatatattggtaggtgtagtgt |
6973445 |
T |
|
| Q |
206 |
tgaagaaaatttaaatcgctacttctttggtctgcaattacaatttggttaggtgtt-------ctctttcaaataacacatctgttaattttaaccaat |
298 |
Q |
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| T |
6973444 |
tgaagaaaatttaaatcgctatttatttggtctgcaattacgatttggttaggtgtttctcgcgctctttcaaataacacatctgttaatttcgaccaat |
6973345 |
T |
|
| Q |
299 |
tatgtggtatacatgtcatcaatgtgaagtcaaaagattgttttcttgtcatttggttagctagcatttggatgatttgaaaacttaataaatagtaacc |
398 |
Q |
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| T |
6973344 |
tatgtggtatacatgtcctcaatgtgaagtcaaaagattgctttcttgtcatttggttagctagcatttggatgatttgaaaacttaataaatagtaacc |
6973245 |
T |
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| Q |
399 |
ttttggg |
405 |
Q |
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| T |
6973244 |
ttttggg |
6973238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 726 - 972
Target Start/End: Complemental strand, 6972734 - 6972484
Alignment:
| Q |
726 |
ccatatatttgatgacgaagtttggttaattattaagtcttcgactttatagggaccattgtacctttgtattaccaccaaatagacaatggtttagtga |
825 |
Q |
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| T |
6972734 |
ccatatatttaatgacgaagttttgttaattattaagtcttcgactttatagggaccattgtacctttgtattaccaccaaatagacaatggtttagtga |
6972635 |
T |
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| Q |
826 |
gtactggttgtatataaattcaatagtccaacaacttgtccaattatcactcaatgaaccacatccttacattattttgtaaatttgaatatc-aattac |
924 |
Q |
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| T |
6972634 |
gtactggttgtatataaattcaatagtccaacaacttgtccaattatcactcaatgaaccacatccttaaattattttgtaaatttgaatatcaaattac |
6972535 |
T |
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| Q |
925 |
tttatccatacaattgtgttttt--gtttgcata-taactaatatactgtg |
972 |
Q |
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| T |
6972534 |
tttatccatacaattgtgttttttgttttgcatattaactaatatactgtg |
6972484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 400 - 570
Target Start/End: Complemental strand, 6973061 - 6972891
Alignment:
| Q |
400 |
tttgggaaataataatcaatattgagtttatcattaagcaaatcaaaatctaatgtggtggtgtggctcaaagcgaaggtgaaggaattagaatatgact |
499 |
Q |
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| T |
6973061 |
tttgggcaataataatcaatattgagtttatcattaagcaaatcaaaatctaatgtggtggtgtggctcaaagtgaaggtgaaggaattagaatatgact |
6972962 |
T |
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| Q |
500 |
tcattcattggtgggacaaatccacttcattgcctttgctacttggatcttcttcataagattttgtgaac |
570 |
Q |
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| T |
6972961 |
tcgttcattggtgggacaaatccacttcattgcctttgctacttggatcttcttcataagattttgtgaac |
6972891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 611 - 659
Target Start/End: Complemental strand, 6972849 - 6972801
Alignment:
| Q |
611 |
tttcatgttgaaccaaatgcatgcgcaaaggaacgaaacaataaaaggt |
659 |
Q |
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| T |
6972849 |
tttcatgttgaaccaaatgcatgcgcaaaggaacgaaacaataaaaggt |
6972801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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