View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4493-Insertion-11 (Length: 425)
Name: NF4493-Insertion-11
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493-Insertion-11 |
 | |
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| [»] chr2 (11 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0250 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Complemental strand, 44624143 - 44623725
Alignment:
| Q |
7 |
agcaacatttaccaaattctttttcttcatcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44624143 |
agcaacatttaccaaattctttttcttcatcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatc |
44624044 |
T |
|
| Q |
107 |
cttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44624043 |
cttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcg |
44623944 |
T |
|
| Q |
207 |
aatttctcttcctttgcttcaaaaagtactttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttctt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
44623943 |
aatttctcttcctttgcttcaaaaagtactttcacttgaactttaaattcctcttcttttgattggaactccatcactcttatttcgaattccttttctt |
44623844 |
T |
|
| Q |
307 |
ttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44623843 |
ttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatt |
44623744 |
T |
|
| Q |
407 |
tacttgaccatcaagtata |
425 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
44623743 |
tacttgaccatcaagtata |
44623725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 102 - 399
Target Start/End: Complemental strand, 44614857 - 44614563
Alignment:
| Q |
102 |
agatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcattttta |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |
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|
| T |
44614857 |
agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc |
44614758 |
T |
|
| Q |
202 |
cttcgaatttctcttcctttgcttcaaaaagtactttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattcctt |
301 |
Q |
| |
|
|||| |||| |||| |||||| |||||| | | |||||| | ||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||| |
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|
| T |
44614757 |
cttcaaattcctctacctttgtttcaaacatt---ttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattcctt |
44614661 |
T |
|
| Q |
302 |
ttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaa |
399 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||| | | |||||||||||||||||| || |||||||| ||||||||||||| ||| |||| |
|
|
| T |
44614660 |
ttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtcctccaccaggccttcaaattcacccttttcagactcaa |
44614563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 39370217 - 39370109
Alignment:
| Q |
36 |
tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctctt |
135 |
Q |
| |
|
|||| |||||||| |||| ||||| ||| |||| |||||||| | || ||||||| |||||||| |||| |||||| |||| | ||| ||| ||||||| |
|
|
| T |
39370217 |
tcatattgtttctttgtcgactcaggcttctttagttgtccatccaatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctctt |
39370118 |
T |
|
| Q |
136 |
ttaattcga |
144 |
Q |
| |
|
||||||||| |
|
|
| T |
39370117 |
ttaattcga |
39370109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 39459361 - 39459274
Alignment:
| Q |
36 |
tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaa |
123 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||| ||||||| |||||||||| |||||||||| ||||||||| |||| |||||| |
|
|
| T |
39459361 |
tcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaa |
39459274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 39468448 - 39468345
Alignment:
| Q |
36 |
tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctctt |
135 |
Q |
| |
|
|||| ||||||| || |||||||| ||||||| | |||||| |||| ||| || |||||||| ||| ||||||| |||| |||||||||| ||||||| |
|
|
| T |
39468448 |
tcatattgtttccctttcaactcaggctccttcgcttgtccgtcaaacttaatcgactttgactgaagttccttgacttgtccttcaatctgcttctctt |
39468349 |
T |
|
| Q |
136 |
ttaa |
139 |
Q |
| |
|
|||| |
|
|
| T |
39468348 |
ttaa |
39468345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 39152679 - 39152581
Alignment:
| Q |
41 |
ttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaa |
139 |
Q |
| |
|
||||||||||||||| ||| ||||||| | |||||| || ||||| |||||||||| |||||||||| || |||||||| ||| ||||||||||| |
|
|
| T |
39152679 |
ttgtttctctgtcaaatcatgctccttcgactgtccatcatgtttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaa |
39152581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 355
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
| Q |
249 |
ttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttttt |
348 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||| || | ||||| ||||||||||||||| | |||||| || | |||||||||| | | |||| |
|
|
| T |
39473637 |
ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt |
39473736 |
T |
|
| Q |
349 |
ctgattc |
355 |
Q |
| |
|
||||||| |
|
|
| T |
39473737 |
ctgattc |
39473743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 39397783 - 39397886
Alignment:
| Q |
36 |
tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctctt |
135 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||| |||||||| |||| |||| |||| |||||| ||| ||||||| | | || ||| ||| ||||||| |
|
|
| T |
39397783 |
tcatattgtttccctgtcaactcaggctccttcagttgtccatcaaatttatccagccttgactcaagttccttgactcgacctgcaacctgcttctctt |
39397882 |
T |
|
| Q |
136 |
ttaa |
139 |
Q |
| |
|
|||| |
|
|
| T |
39397883 |
ttaa |
39397886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 420
Target Start/End: Complemental strand, 39459064 - 39458917
Alignment:
| Q |
273 |
aactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggc |
372 |
Q |
| |
|
|||||| ||||| || |||||||| ||||||||||||||| | |||||| | | |||||||||| | | ||||||||||| || ||| ||| ||| |
|
|
| T |
39459064 |
aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc |
39458965 |
T |
|
| Q |
373 |
cttccaattcaccctttttagattcaaactcatttacttgaccatcaa |
420 |
Q |
| |
|
|||| |||||| ||| ||| ||||||| ||| ||| || ||||||||| |
|
|
| T |
39458964 |
cttcaaattcatcctcttttgattcaatctcctttgctcgaccatcaa |
39458917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 39389332 - 39389417
Alignment:
| Q |
237 |
ttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactcctt |
322 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||| |||||| ||||| ||| ||| |||| || |||||||| |||| |||||| |
|
|
| T |
39389332 |
ttcacttgttcttcaaattcctcctcttttgattgaaactccttcacttttccttcgaatttctcctcttttgactcaagctcctt |
39389417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 39390708 - 39390741
Alignment:
| Q |
290 |
ttcaaattccttttcttttgattcaaactccttt |
323 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
39390708 |
ttcaaattccttctcttttgattcaaactccttt |
39390741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 290 - 425
Target Start/End: Complemental strand, 40347507 - 40347372
Alignment:
| Q |
290 |
ttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcacccttt |
389 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| || | ||| |||||||||||| |
|
|
| T |
40347507 |
ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt |
40347408 |
T |
|
| Q |
390 |
ttagattcaaactcatttacttgaccatcaagtata |
425 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40347407 |
ttagattcaaactcatttactcgaccatcaagtata |
40347372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 45342181 - 45342056
Alignment:
| Q |
14 |
tttaccaaattctttttcttcatcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatt |
113 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||||| ||||||||||||||||||| ||||||| | ||||||||||||||||||| ||| ||||||||| |
|
|
| T |
45342181 |
tttaccaaattctttttcctcatcgtattgtttctttgtcaactcaagctcctttatttgtccatccaaattattcagctttgactcaaggtccttgatt |
45342082 |
T |
|
| Q |
114 |
tgtacttcaatctgattctcttttaa |
139 |
Q |
| |
|
|| ||||||| ||||||||||||||| |
|
|
| T |
45342081 |
tgcacttcaaactgattctcttttaa |
45342056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 16113402 - 16113305
Alignment:
| Q |
42 |
tgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaa |
139 |
Q |
| |
|
|||||| |||| |||||| ||||||| ||||||| ||||| | ||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
16113402 |
tgtttccctgttaactcaggctccttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaa |
16113305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 17059612 - 17059551
Alignment:
| Q |
9 |
caacatttaccaaattctttttc---ttcatcatgttgtttctctgtcaactcaagctcctt |
67 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
17059612 |
caacatttaccaaattcattttccccttcatcatgttgtttctttgtcaactcaaactcctt |
17059551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 4375 - 4326
Alignment:
| Q |
150 |
ttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttt |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
4375 |
ttgacaaatttgagattgtcctcaacttggctttcaaattgctgcttttt |
4326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 51574654 - 51574601
Alignment:
| Q |
230 |
aagtactttcacttggactttaaattcctcttcttttgattggaactccatcac |
283 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||||||| |||||| |||| |
|
|
| T |
51574654 |
aagtaccttcacttggactttaaagtcctcctcttttgattcaaactccttcac |
51574601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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