View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4493-Insertion-12 (Length: 345)

Name: NF4493-Insertion-12
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4493-Insertion-12
NF4493-Insertion-12
[»] chr6 (1 HSPs)
chr6 (8-345)||(24809151-24809488)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 24809488 - 24809151
Alignment:
Q  8 tgaatgatatacaacagatggaaacaaatgaaggaagataggatgtccttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24809488 tgaatgatatacaacagatggaaacaaatgaaggaagataggatgtccttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaaga 24809389  T
Q  108 gacatgataataatcaaagaaactgaaacatatgtcaccatgttcatctcaactannnnnnnagtcactgttgttttctctgactacatgtttttgctga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  24809388 gacatgataataatcaaagaaactgaaacatatgtcaccatgttcatctcaactatttttttagtcactgttgttttctctgactacatgtttttgctga 24809289  T
Q  208 gatactctctcagttgttgtccacaacaattatgtatgtgtttcagagtttatattatgttttcatgtatacatataattacatgttcatttactcatgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24809288 gatactctctcagttgttgtccacaacaattatgtatgtgtttcagagtttatattatgttttcatgtatacatataattacatgttcatttactcatgt 24809189  T
Q  308 aagggttttatacttgtattgtataatgtatagtatag 345  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24809188 aagggttttatacttgtattgtataatgtatagtatag 24809151  T

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