View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493-Insertion-13 (Length: 140)
Name: NF4493-Insertion-13
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493-Insertion-13 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 9e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 570582 - 570714
Alignment:
| Q |
8 |
gaaagcatgtacgaaaagtaaccatccaaaacgatggcactcagatatacggttggtaacagacgacttattctcgacatttgcatcagttgacacgaag |
107 |
Q |
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| T |
570582 |
gaaagcatgtacgaaaagtaaccatccaaaacgatggcactcagatatacggttggtaacagacgacttattttcaacatttgcatcagttgacacgaag |
570681 |
T |
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| Q |
108 |
aactcttcaaatacacgcttataatacctggca |
140 |
Q |
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| T |
570682 |
aactcttcaaatacacgcttataatacctggca |
570714 |
T |
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Target: chr8 (Bit Score: 97; Significance: 5e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 15102780 - 15102900
Alignment:
| Q |
20 |
gaaaagtaaccatccaaaacgatggcactcagatatacggttggtaacagacgacttattctcgacatttgcatcagttgacacgaagaactcttcaaat |
119 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
15102780 |
gaaaagtaaccatccaaaacgatggcactcagatacacggcccgtaacagacgacttattttcaacatttgcatcagttgacacgaagaactcttcaaat |
15102879 |
T |
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| Q |
120 |
acacgcttataatacctggca |
140 |
Q |
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| T |
15102880 |
acacgcttataatacctggca |
15102900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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