View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4493-Insertion-3 (Length: 849)
Name: NF4493-Insertion-3
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493-Insertion-3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 819; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 8 - 842
Target Start/End: Original strand, 47657378 - 47658212
Alignment:
| Q |
8 |
acaaggaattttaatggggtatggtgaatttgaaaaacccttggaaattggtgcggaaaaatcaaatttttcagatagggtgttggataagcttacgtct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47657378 |
acaaggaattttaatggggtatggtgaatttgaaaaacccttggaaattggtgcggaaaaatcgaatttttcagatagggtgttggataagcttacgtct |
47657477 |
T |
|
| Q |
108 |
gaggctggaactgggtttgtttcggttgtggttggaagttttgctaggaatttggttttgggtcttcgttcgaagttggaaaatgttgattccgggtcga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47657478 |
gaggctggaactgggtttgtttcggttgtggttggaagttttgctaggaatttggttttgggttttcgttcgaagttggaaaatgttgattccgggtcga |
47657577 |
T |
|
| Q |
208 |
aatctgatggtgtttctggatttgttagtgtgatttgtgatgaaaagtgtgggaaggttataggggattgtgtgcagacttttgtggctactgctgttgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47657578 |
aatctgatggtgtttctggatttgttagtgtgatttgtgatgaaaagtgtgggaaggttataggggattgtgtgcagacttttgtggctactgctgttgc |
47657677 |
T |
|
| Q |
308 |
tgtttttcttgataaaacaatggatgttaatacttatgatgaaatttttgctggaatgacgaatccaaaacaccacgaaaaggtgaagggaattttggtt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47657678 |
tgtttttcttgataaaacaatggatgttaatacttatgatgaaatttttgctggaatgacgaatccaaaacaccacgaaaaggtgaagggaattttggtt |
47657777 |
T |
|
| Q |
408 |
tctctatgtaacggtgctgttgagactttggttaaaacatctcatcaggttttgactaatccaaaaggtaaatctgatttgagttcacctagggaaaacg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47657778 |
tctctatgtaacggtgctgttgagactttggttaaaacatctcatcaggttttgactaatccaaaaggtaaatctgatttgagttcacctagggaaaacg |
47657877 |
T |
|
| Q |
508 |
agcgtttgaaaccggaagcttatcttcagaaattcagaaatggaggctctgttgatggagttggggattctgggtggcttgaacaggttaaatcaactct |
607 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47657878 |
ggcttttgaaaccggaagcttatcttcagaaattcagaaatggaggctctgttgatggagttggggattctgggtggcttgaacaggttaaatcaactct |
47657977 |
T |
|
| Q |
608 |
ttctgtgccagctaaccagaggtttgtgtttgatgtcacggggagagtgacattcgaaactgcgaggtcatttgtggagtttatgttgtggagaatatca |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47657978 |
ttctgtgccagctaaccagaggtttgtgtttgatgtcacggggagagtgacattcgaaactgcgaggtcatttgtggagtttatgttgtggagaatatca |
47658077 |
T |
|
| Q |
708 |
gaaggtttgaaaaggggtgttaacaaggttcatgacgacgttgtagacaaaggaatgcaagttgttagatatgtaggagctaagtcgtcggttattatta |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47658078 |
gaaggtttgaaaaggggtgttaacaaggttcatgacgacgttgtagacaaaggaatgcaagttgttagatatgtaggagctaagtcgtcggttattatta |
47658177 |
T |
|
| Q |
808 |
ccttgtgtcttgctttatatttacatattttgggt |
842 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
47658178 |
ccttgtgtcttgctttatatttacatattttgggt |
47658212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 9219617 - 9219550
Alignment:
| Q |
201 |
gggtcgaaatctgatggtgtttctggatttgttagtgtgatttgtgatgaaaagtgtgggaaggttat |
268 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| |||||||||| |||| |||||||||||| |
|
|
| T |
9219617 |
gggtggaaatctgatggtgtttctggatttgtgagtgtgctttgtgatgagaagtatgggaaggttat |
9219550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University