View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493-Insertion-4 (Length: 743)
Name: NF4493-Insertion-4
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493-Insertion-4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 664; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 8 - 743
Target Start/End: Complemental strand, 4756899 - 4756159
Alignment:
| Q |
8 |
ctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagaccaatataagttgacaatg |
107 |
Q |
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| T |
4756899 |
ctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagactaatataagttgacaatg |
4756800 |
T |
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| Q |
108 |
cttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggt |
207 |
Q |
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| T |
4756799 |
cttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggt |
4756700 |
T |
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| Q |
208 |
tgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctctggtgtgcatactatgatgcttggactcccaaacaaatgt |
307 |
Q |
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| T |
4756699 |
tgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctctggtgtgcatactatgatgcttggactaccaaacaaatgt |
4756600 |
T |
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| Q |
308 |
gttctatacatacctgtctttccatatctaataaaataaaagtaacattaatcacttttgtgagtagtactaaagatgttttgactcctctacagccgca |
407 |
Q |
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| T |
4756599 |
gttctatacatacctgtctttccatatctaataaaataaaagtaacattaataacttttgtgagtagtactaaagatgttttgactcctctacagccaca |
4756500 |
T |
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| Q |
408 |
tacggtgcaatactttcagaattgttgaaattagttaaactgaaagtcaaaagtttaacagtttaaataattcaacgattctctagtaactgtaccgtac |
507 |
Q |
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| T |
4756499 |
tacggtgcaatactttcagaatcgttgaaattagttaaactgaaagtcaaaagtttaactctttaaataattcaacgattctctagtaactgtaccgtac |
4756400 |
T |
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| Q |
508 |
aaatgccgcagagaattcaaattcacactatgagc--aatagatagaagagtacctagaaacaaggttattgatgaaggaatcaggat---cagacttga |
602 |
Q |
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| T |
4756399 |
aaatgcggcagagaattcaaattcacactatgagcaaaatagatagaagagtacctagaaacaaggttattgatgaaggaatcaggatcagcagatttga |
4756300 |
T |
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| Q |
603 |
aggctttgaggaaggtaggcatgttgccaaggaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattc |
702 |
Q |
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| T |
4756299 |
aagctttaaggaaggtaggcatgttaccaaagaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattc |
4756200 |
T |
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| Q |
703 |
attcaatctccttaggaaaccaaacacaaatgcatatccac |
743 |
Q |
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| T |
4756199 |
attcaatctccttaggaaaccaaacacaaatgcatatccac |
4756159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 613 - 743
Target Start/End: Complemental strand, 4746683 - 4746553
Alignment:
| Q |
613 |
gaaggtaggcatgttgccaaggaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctc |
712 |
Q |
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| T |
4746683 |
gaaggtaggcatgttaccaaagaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctc |
4746584 |
T |
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| Q |
713 |
cttaggaaaccaaacacaaatgcatatccac |
743 |
Q |
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| T |
4746583 |
cttaggaaaccaaacacaaatgcatatccac |
4746553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 4749056 - 4748736
Alignment:
| Q |
13 |
ctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagaccaatataagttgacaatgcttcg |
112 |
Q |
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| T |
4749056 |
ctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaat---tcg |
4748960 |
T |
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| Q |
113 |
tcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttgaat |
212 |
Q |
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| T |
4748959 |
tgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaag |
4748860 |
T |
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| Q |
213 |
gagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctctggtgtgcatactatgatgcttggactcccaaacaaatgtgttct |
312 |
Q |
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| T |
4748859 |
cagggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgtctctggcgagcaaactatgacggttggatacccaaacaaatgtgtcct |
4748760 |
T |
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| Q |
313 |
atacatacctgtctttccatatct |
336 |
Q |
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| T |
4748759 |
gtacatacctgtcctgccatatct |
4748736 |
T |
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Back To:
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