View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493-Insertion-5 (Length: 700)
Name: NF4493-Insertion-5
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 284 - 684
Target Start/End: Original strand, 44919911 - 44920306
Alignment:
| Q |
284 |
gcgagtcaagtcctattttagtccatgacannnnnnnnnnaaggttagtctctcatactatatatagataatgcaacttttagtctttcacaataaatag |
383 |
Q |
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| T |
44919911 |
gcgagtcaagtcctattttagtcaatgacattttttttt-aaggttagtctctcatactata----gataatgcaacttttagtctttcataataaatag |
44920005 |
T |
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| Q |
384 |
tttcttttattgtattgttttcatctgatttctaagtcagttgtgtcattataataaataaagagacaatacggtcgttggctattatgggttccaagta |
483 |
Q |
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| T |
44920006 |
tttcttttattgtattattttcatctgatttgtaagtcagttgtgtcattataataaataaagagacaatacggtcgttggctattatgggttccgagta |
44920105 |
T |
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| Q |
484 |
atctcaagtcactcgcacttacatggaccatgatatggacttgccctaaatccactaaatcaaggccgcacaaaataatctagaccgtcgataccagata |
583 |
Q |
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| T |
44920106 |
atctcaagtcactcgcacttacatggaccatgatatggactttccctaaatccactaaatcaaggccgcacaaaataatctagaccgtcgataccagata |
44920205 |
T |
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| Q |
584 |
caaggcttacttgtcctgatctgccattgtggaatcgaatcgatgagtagtaaagagggttactaattgttttgttggctgaggcattgtccacatgcaa |
683 |
Q |
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| T |
44920206 |
caaggcttgcttgtcctgatctgccattgtggaatcgaatcgatgagtagtaaagagggttactaattgttttgttggctaaggcattgtccacatgcaa |
44920305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 44919634 - 44919847
Alignment:
| Q |
7 |
accaataatcaacaacaattaacaagtgaagaatcatactatacccaaaaaggaaagtccaaaaggttccaacatacatagcctcaaactgtacagacca |
106 |
Q |
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| T |
44919634 |
accaataatcaacaacaattaacaagtgaagaatcatactatacccaaaaaggaaagtccaaaaggttccaacatacatagcctcaaactgtacagacca |
44919733 |
T |
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| Q |
107 |
gctgcctaaattctttctcttcttattgctagtagatatagtctttgattcgatgtgggcctaaatgaggccaactatggaaataaattttggaggattt |
206 |
Q |
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| T |
44919734 |
gctgcctaaattctttctcttcttattgctagtagatatagtctttgattcgatgtgggcctaaatgaggccaactatggaaataaattttggaggattt |
44919833 |
T |
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| Q |
207 |
ggatgttctcccac |
220 |
Q |
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| T |
44919834 |
cgatgttctcccac |
44919847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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