View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493-Insertion-7 (Length: 581)
Name: NF4493-Insertion-7
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 43468922 - 43468636
Alignment:
| Q |
8 |
gttatcgaaatgagtcaatcttacaagactaaacattattttaaatgggtcttgattttttaatagtataacacttgataatgtttatttgcttgatacg |
107 |
Q |
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| T |
43468922 |
gttatcgaaatgagtcaatcttacaagactaaacattattttaaatgggtcttgattttttaattgtataacacttgataatgtttatttgcttgatacg |
43468823 |
T |
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| Q |
108 |
gatcctttttcttttatcctatcttataaaacttttttgatggcttaatttaccaccataaggcttactttactataagattttaaaataactaagagcc |
207 |
Q |
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| T |
43468822 |
gaccctttttcttttatcctatcttataaaacttttttgacggcttaattt---accataaggcttactttactataagattttaaaataactaagagcc |
43468726 |
T |
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| Q |
208 |
ctatgattatacaaatatattattattttttatcaaattatttagtggttagaaattcactttcttaatatgaataagtggatagtctca |
297 |
Q |
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| T |
43468725 |
ctatgattatacaaatatattattattttttatcaaataattcagtggttataaattcactttcttaatagaaataagtggatagtctca |
43468636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 298 - 581
Target Start/End: Complemental strand, 43468596 - 43468314
Alignment:
| Q |
298 |
tataactgaattatgctcatagaaacaaacatgtatcaatcttttatcagacctaaatattcagtttacatacatatccacgcagataggcacacgcaca |
397 |
Q |
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| T |
43468596 |
tataactgaattatgctcatagaaacaaacatgtatcagtcttttatgagacctaaatattcagtttacatacatatccacacagatag-ctcatagaaa |
43468498 |
T |
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| Q |
398 |
tatatatacttttttgattggtcgttaatataaaagacttctggaatgtgtaacagtaagctatatatccattttgttgaatatattttctcataattga |
497 |
Q |
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| T |
43468497 |
caaacattattttttgattggtcgttaatatagaagacttctggaatgtgtaacagtaagctatatatctattttgttgaatatattttctcataatcga |
43468398 |
T |
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| Q |
498 |
ttgattttcttaccataaaataatgaatacatacatttgtcttcagaacctaggttaacccttctttaagaatgtctgtgttga |
581 |
Q |
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| T |
43468397 |
ttggttttcttaccataaaataatgaatacatacatttgtcttcagaacctaggttaacccttctttaagaatgtctgtgttga |
43468314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 532 - 579
Target Start/End: Complemental strand, 43477430 - 43477383
Alignment:
| Q |
532 |
atttgtcttcagaacctaggttaacccttctttaagaatgtctgtgtt |
579 |
Q |
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| T |
43477430 |
atttgtcttcagaatctaggttaacccttcgttaagaatgtctttgtt |
43477383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 19208844 - 19208900
Alignment:
| Q |
231 |
tattttttatcaaattatttagtggttagaaattcactttcttaatatgaataagtg |
287 |
Q |
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| T |
19208844 |
tattttttgtcaaatggtttagtggttagaaattcacatttttaaagtgaataagtg |
19208900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 382039 - 382095
Alignment:
| Q |
233 |
ttttttatcaaattatttagtggttagaaattcactttcttaatatgaataagtgga |
289 |
Q |
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| T |
382039 |
ttttttgtcaaataatttagcggttagagattcacctttttaaaatgaataagtgga |
382095 |
T |
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