View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_high_10 (Length: 322)
Name: NF4493_high_10
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 6974226 - 6973903
Alignment:
| Q |
1 |
tggtttttgtctatggaatgatgtgctccatgataagattattattttgggttgagagtgaaatatgtggtggataatttttaggcatacataagacacg |
100 |
Q |
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| T |
6974226 |
tggtttttgtctatggaatgatgtgctccatgataagattattattttgggttgagagtgaaatatgtggtggatagtttttaggcattcataagacacg |
6974127 |
T |
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| Q |
101 |
tcacttatataaaatataaattgtgtcgttatcctttcttttctttccaaaactagctaggcaacaaaatgaggaatcaaaaaagctatataaaagcaag |
200 |
Q |
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| T |
6974126 |
tcacttatataaaatataaattgtgtcgttatcctttcttttctttccaaaactagctaggcaacaaaatgaggaatcaaaaaagctatataaaagcaag |
6974027 |
T |
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| Q |
201 |
cataccatgggctcaaaaaatgagcacgtaccaattgatctctcctttcatactagcat--atattaagaaaatcttctctacgaagtaaatgaataatt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
6974026 |
cataccatgggctcaaaaaatgagcacgtaccaattgatctctcctttcatactagcatatatattaagaaaatcttctctacgaagtaaatgaataaat |
6973927 |
T |
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| Q |
299 |
ccaaggcctattatatactgttaa |
322 |
Q |
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| T |
6973926 |
ccaaggcctattatatactgttaa |
6973903 |
T |
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