View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4493_high_11 (Length: 321)

Name: NF4493_high_11
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4493_high_11
NF4493_high_11
[»] chr2 (1 HSPs)
chr2 (17-303)||(40997869-40998156)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 40998156 - 40997869
Alignment:
Q  17 atagcaaggtaacaaaagaact-gagaaaaa-ccaaactaaaatcgtttaaaccagtaaaaatccaggattgagctagttaagtaagttggaccgaattt 114  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  40998156 atagcaaggtaacaaaagaacttgagaaaaaaccaaactaaaatcgtttaaaccagtcaaaatccacgattgagctagttaagtaagttggaccgaattt 40998057  T
Q  115 tgtaaatgttgcaccgacacattgtgatgatttgtctatgcattaaaagattacataacatatcatttattttacgttgcaatgactcatagactgaatc 214  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40998056 tgtaaatgttgcacctacacattgtgatgatttgtctatgcattaaaa-attacagaacatatcatttattttacgttgcaatgactcatagactgaatc 40997958  T
Q  215 ttgattcttcatgtttgattcaaaaaccaagagagcagtgctcatttcgcagaaatatataaacaataataatcaccattaaaaaatta 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40997957 ttgattcttcatgtttgattcaaaaaccaagagagcagtgctcatttcgcagaaatatataaacaataataatcaccattaaaaaatta 40997869  T

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