View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_high_14 (Length: 294)
Name: NF4493_high_14
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 2544418 - 2544154
Alignment:
| Q |
17 |
atgaacaatggataagaaccggtgatgaaagcaaggaaaatggtcttatacatgtgaaaggaatttcaaaaaatatactccaatgtagtaataaatacaa |
116 |
Q |
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| T |
2544418 |
atgaacaatggataagaaccggtgatgaaagcaaggaaaatggtcttatacatgtgaaaggaatttcaaaaaatatactccaatgtagtaacaaatacaa |
2544319 |
T |
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| Q |
117 |
cnnnnnnnnnatgatccttnnnnnnnnnnncttattcgctttttgaacaaccaagagtgatcc---aagaagtgttaatgttagtgnnnnnnnnttggat |
213 |
Q |
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| T |
2544318 |
ctttttttttatgatcctt-aaaaaaaaaactcattcgttttttgaacaacccagagtgatcccaggagaagtgttaatgttagtgaaaaaaaattgggt |
2544220 |
T |
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| Q |
214 |
gaattgaagggactactgtcccaagcaatagagcgcaaaag-aattctgtgatgatcataactatt |
278 |
Q |
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| T |
2544219 |
gaattgaagggactactatcccaagttatagagcgcaaaagaaagtttttgatgatcataactatt |
2544154 |
T |
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