View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_high_18 (Length: 251)
Name: NF4493_high_18
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 570339 - 570088
Alignment:
| Q |
1 |
tgaacagagtaacatcaataacaatattaccactagagctttgactagataaaatggtagcattgaatatgggttgtacaatgatgaatttgggtagctt |
100 |
Q |
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| T |
570339 |
tgaacagagtaacatcaataacaatattaccattagagctttgactagataaaatggtagcattgaatatgggttgtacaatgatgaatttgggtagctt |
570240 |
T |
|
| Q |
101 |
tgtttgcatactcgagtcactagccaatattgagtgtttggttattaatttgttgaactaaagtgtcacttttctgccactaattttcgt---------- |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
570239 |
tgtttgcatactcgagtcactagccaatattgagtgtttgtttattaatttgttgaactaaagtgtcacttttctgtcactaattttcgtttgttttcgt |
570140 |
T |
|
| Q |
191 |
ttgtagtcttttagtttctgtt-gactctagtttggtgttgtcttttctgtg |
241 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
570139 |
ttgtagtcttttagtttctgttagactctagtttggtgttgtcttttgtgtg |
570088 |
T |
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