View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4493_high_2 (Length: 456)

Name: NF4493_high_2
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4493_high_2
NF4493_high_2
[»] chr2 (6 HSPs)
chr2 (3-438)||(22299261-22299696)
chr2 (3-438)||(24806963-24807398)
chr2 (178-438)||(44793486-44793746)
chr2 (234-438)||(22300574-22300778)
chr2 (27-217)||(23732546-23732735)
chr2 (402-438)||(44792585-44792621)
[»] chr5 (1 HSPs)
chr5 (3-415)||(29950795-29951207)
[»] chr7 (2 HSPs)
chr7 (12-438)||(40998897-40999323)
chr7 (30-99)||(21585732-21585801)
[»] chr4 (7 HSPs)
chr4 (3-438)||(15018318-15018753)
chr4 (12-415)||(19457179-19457584)
chr4 (12-187)||(19458894-19459068)
chr4 (314-406)||(19459185-19459277)
chr4 (402-438)||(11098469-11098505)
chr4 (402-438)||(42873106-42873142)
chr4 (404-438)||(18281423-18281457)
[»] chr1 (6 HSPs)
chr1 (12-415)||(20189498-20189901)
chr1 (27-217)||(22063128-22063318)
chr1 (401-438)||(40554732-40554769)
chr1 (402-438)||(31390119-31390155)
chr1 (402-438)||(31390578-31390614)
chr1 (402-438)||(40553873-40553909)
[»] scaffold1778 (1 HSPs)
scaffold1778 (3-163)||(1210-1370)
[»] chr3 (3 HSPs)
chr3 (3-105)||(16348059-16348161)
chr3 (12-123)||(16346333-16346444)
chr3 (366-406)||(16020185-16020225)
[»] scaffold0146 (1 HSPs)
scaffold0146 (3-123)||(8570-8690)
[»] chr8 (4 HSPs)
chr8 (340-415)||(17277585-17277660)
chr8 (401-440)||(23016770-23016809)
chr8 (402-440)||(23016436-23016474)
chr8 (402-438)||(17857133-17857169)
[»] chr6 (3 HSPs)
chr6 (35-123)||(20417008-20417096)
chr6 (12-123)||(20416048-20416159)
chr6 (12-123)||(20418620-20418731)
[»] scaffold0180 (1 HSPs)
scaffold0180 (401-440)||(11473-11512)
[»] scaffold0083 (1 HSPs)
scaffold0083 (21-123)||(34302-34404)
[»] scaffold0321 (1 HSPs)
scaffold0321 (402-438)||(5190-5226)
[»] scaffold0139 (1 HSPs)
scaffold0139 (402-438)||(4195-4231)
[»] scaffold0002 (1 HSPs)
scaffold0002 (402-438)||(375386-375422)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 3 - 438
Target Start/End: Original strand, 22299261 - 22299696
Alignment:
Q  3 aggagtagcaaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgtt 102  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  22299261 aggagaagaaaaggagaatgagatggaaaaggaagagaaaaatgttgagaagttttggcctactattacattagtaccttcttctaaattggtttgtgtt 22299360  T
Q  103 ttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaag 202  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  22299361 ttcaaatgttgggattcttcttctaatattattcaattgcctaacatttctttatgtcatgaaggaaacaaagagaatgaagaaactttttctcaacagg 22299460  T
Q  203 tggaagaaaattatgaaatatggaacgatgatcatgtccataaatcaaaagtggatgaaaagaaaacaaattcttccaataaaagtgaagtgctctttaa 302  Q
    |||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||    
T  22299461 tggaaggaaattatgagatttggaacgatgatcatgtccataaatcaaaagtggatgaaaagaaaacaaattcttccaataaaagtgatgagctctctaa 22299560  T
Q  303 atttaaagttacatgtgatggattcaatataattgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtat 402  Q
    | ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22299561 agttaaagttacatgtgatggattccatagatttgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagatggagagtat 22299660  T
Q  403 gatgtgatcctaagatgttctccctttacaagaata 438  Q
    ||||||||||||| ||  |||| ||| |||||||||    
T  22299661 gatgtgatcctaaaattctctctcttgacaagaata 22299696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 3 - 438
Target Start/End: Complemental strand, 24807398 - 24806963
Alignment:
Q  3 aggagtagcaaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgtt 102  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  24807398 aggagaagaaaaggagaatgagatggaaatggaagagaaaaatgttgagaagttttggcctactattacattagtaccttcttctaaattggtttgtgtt 24807299  T
Q  103 ttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaag 202  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| |    
T  24807298 ttcaaatgttgggattcttcttctaatattattcaattgcctaacatttctttatgtcatgaaggaaacaaagagaacgaagaaactttttcccaacagg 24807199  T
Q  203 tggaagaaaattatgaaatatggaacgatgatcatgtccataaatcaaaagtggatgaaaagaaaacaaattcttccaataaaagtgaagtgctctttaa 302  Q
    |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||    
T  24807198 tggaaggaaattatgagatttggaacgatgatcatgtccataaatcaaaagtggatgaagagaaaacaaattcttccaataaaagtgaagagccctctaa 24807099  T
Q  303 atttaaagttacatgtgatggattcaatataattgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtat 402  Q
    | ||||||||||||||||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24807098 agttaaagttacatgtgatggatttcatagatttgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtat 24806999  T
Q  403 gatgtgatcctaagatgttctccctttacaagaata 438  Q
    ||||||||||||| ||  |||| ||| |||||||||    
T  24806998 gatgtgatcctaaaattctctctcttgacaagaata 24806963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 178 - 438
Target Start/End: Complemental strand, 44793746 - 44793486
Alignment:
Q  178 aatgaagaaactttttctcaacaagtggaagaaaattatgaaatatggaacgatgatcatgtccataaatcaaaagtggatgaaaagaaaacaaattctt 277  Q
    |||||||||| |||||||||||||||||||||||||||||| ||  | ||| | ||| || ||||  ||||||||| | |||||||  ||| ||||||||    
T  44793746 aatgaagaaattttttctcaacaagtggaagaaaattatgagattcgaaacaaagattatttccacgaatcaaaagggaatgaaaaacaaaaaaattctt 44793647  T
Q  278 ccaataaaagtgaagtgctctttaaatttaaagttacatgtgatggattcaatataattgtttttgacccaggaggtattcaagctataaattcgaggtc 377  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44793646 ccaataaaagtgaagtgctctttaaatttaaagctacatgtgatggattcaatataattgttttcgacccaggaggtattcaagctataaattcgaggtc 44793547  T
Q  378 gaattctcttgaagagggagagtatgatgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44793546 gaattctcttgaagagggagagtatgatgtgatcctaagatgttctccctttacaagaata 44793486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 234 - 438
Target Start/End: Complemental strand, 22300778 - 22300574
Alignment:
Q  234 tcatgtccataaatcaaaagtggatgaaaagaaaacaaattcttccaataaaagtgaagtgctctttaaatttaaagttacatgtgatggattcaatata 333  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||| ||| |    
T  22300778 tcatgtctataaatcaaaagtggatgaaaagaaaacaaattcttccaataaaagtgatgagctctctaaagttaaagttacatgtgatggattccataga 22300679  T
Q  334 attgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtatgatgtgatcctaagatgttctccctttacaa 433  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||| ||||    
T  22300678 tttgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtatgatgtgatcctaaaattctctctcttgacaa 22300579  T
Q  434 gaata 438  Q
    |||||    
T  22300578 gaata 22300574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 23732735 - 23732546
Alignment:
Q  27 ggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttca 126  Q
    ||||||||||||||||||||||| |||| |||  || |||||||||||||||||||||||||| ||| || |||||||||| |||||||||||||||||     
T  23732735 ggaaaaggaagagaaaaatgttgggaagtttttccctactattacattagtaccttcttctaagttg-ttagtgttttcaagtgttgggattcttcttct 23732637  T
Q  127 aatattattcaattgtctaacatttctttatgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaaattatg 217  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    ||| ||||||||||||| ||||||||    
T  23732636 aatattattcaattgcctaacatttctttatgtcatgaaggaaacaaagagaatgaagaaaaaaattcccaacaagtggaaggaaattatg 23732546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 44792585 - 44792621
Alignment:
Q  402 tgatgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  44792585 tgatgtgatcctaagatgttctccctttacaagaata 44792621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 3 - 415
Target Start/End: Original strand, 29950795 - 29951207
Alignment:
Q  3 aggagtagcaaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgtt 102  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||  |||| ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  29950795 aggagaagaaaaggagaatgagaaggaaaaggaagagaaaaatgttaggaagttttggcctactattacattagtaccttcttctaagttggtttgtgtt 29950894  T
Q  103 ttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaag 202  Q
    || |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29950895 tttaaatgttgggattcttcttctaatattattcaattgcctaacatttctttatgtcatgaaggaaacaaagagaatgaagaaactttttctcaacaag 29950994  T
Q  203 tggaagaaaattatgaaatatggaacgatgatcatgtccataaatcaaaagtggatgaaaagaaaacaaattcttccaataaaagtgaagtgctctttaa 302  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||    
T  29950995 tggaagaaaattatgagatttggaacgatgatcatgtccataaatcaaaagtggatgaaaagaaaactaattcttccaataaaagtgaagagctctctaa 29951094  T
Q  303 atttaaagttacatgtgatggattcaatataattgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtat 402  Q
    | ||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29951095 agttaaagttacatgtgatggattccatagatttatttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtat 29951194  T
Q  403 gatgtgatcctaa 415  Q
    |||||||||||||    
T  29951195 gatgtgatcctaa 29951207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 438
Target Start/End: Complemental strand, 40999323 - 40998897
Alignment:
Q  12 aaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| |    
T  40999323 aaaggagaatgagatggaaaaggaagagaaaaatgttgagaagttttggcctactatgacattagtagcttcttctaaattggtttgtgttttcaaattt 40999224  T
Q  112 tgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaa 211  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||| ||    
T  40999223 tgggattcttcttctaatattattcaattgcttaacatttctttatgttatgaaggaaacaaagagaacgaagaaactttttctcaacaggtggaaggaa 40999124  T
Q  212 attatgaaatatggaacgatgatcatgtccataaatcaaaagtggatgaaaagaaaacaaattcttccaataaaagtgaagtgctctttaaatttaaagt 311  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||| ||||| |    
T  40999123 attatgaaatttagaacgatgatcatgtccataaatcaaaagtggatgaagagaaaacaaattcttccaataaaagtgaagagccctctaaagttaaact 40999024  T
Q  312 tacatgtgatggattcaatataattgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtatgatgtgatc 411  Q
    |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40999023 tacatgtgatggattccatagatttgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtatgatgtgatc 40998924  T
Q  412 ctaagatgttctccctttacaagaata 438  Q
    |||| ||  |||| ||| |||||||||    
T  40998923 ctaaaattctctctcttgacaagaata 40998897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 21585801 - 21585732
Alignment:
Q  30 aaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgt 99  Q
    |||||||||||||| ||||| |||| ||||||| ||||  | | |||||||||| |||||||| ||||||    
T  21585801 aaaggaagagaaaattgttgggaagttttggcctactacaatactagtaccttcatctaaattagtttgt 21585732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 3 - 438
Target Start/End: Complemental strand, 15018753 - 15018318
Alignment:
Q  3 aggagtagcaaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgtt 102  Q
    ||||| || |||||||||||||| ||| |   ||||||| ||||||| |||| ||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  15018753 aggagaagaaaaggagaatgagaaggatagtaaagagaataatgttgggaagttttggcctactattacactagtaccttcttctaagttggtttgtgtt 15018654  T
Q  103 ttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaag 202  Q
    || |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  15018653 tttaaatgttgggattcttcttctaatattattcaattgcctaacatttctttatgtcatgaaggaaacaaagagaatgaagaaactttttctcaacagg 15018554  T
Q  203 tggaagaaaattatgaaatatggaacgatgatcatgtccataaatcaaaagtggatgaaaagaaaacaaattcttccaataaaagtgaagtgctctttaa 302  Q
    |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||    
T  15018553 tggaagaaaattatgtgatttggaacgatgatcatgtccataaatcaaaagtggatgaaaagaaaactaattcttccaataaaagtgaagagctctctaa 15018454  T
Q  303 atttaaagttacatgtgatggattcaatataattgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtat 402  Q
    | ||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15018453 agttaaagttacatgtgatggattccatagatttatttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtat 15018354  T
Q  403 gatgtgatcctaagatgttctccctttacaagaata 438  Q
    ||||||||||||| ||  |||| ||| |||||||||    
T  15018353 gatgtgatcctaaaattatctctcttgacaagaata 15018318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 12 - 415
Target Start/End: Original strand, 19457179 - 19457584
Alignment:
Q  12 aaaggagaatgagatggaaaaggaagag--aaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaat 109  Q
    |||||||||| ||  |||||||||||||  |||||||||| |||| |||| || ||||||| |||||||||||||| ||| |||||||||||||||||||    
T  19457179 aaaggagaataagtaggaaaaggaagagagaaaaatgttgggaagttttgacctactattaaattagtaccttcttataagttggtttgtgttttcaaat 19457278  T
Q  110 gttgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaagtggaaga 209  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||   |||||||||||||||||||    
T  19457279 gttgggattcttcttctaatattattcaattgcctaacatttctttatgtcacgaaggaaacaaagagaatgaagaaaaaatttctcaacaagtggaaga 19457378  T
Q  210 aaattatgaaatatggaacgatgatcatgtccataaatcaaaagtggatgaaaagaaaacaaattcttccaataaaagtgaagtgctctttaaatttaaa 309  Q
    ||||||||   | ||||| |||||| ||||||| |||||| ||| ||| |||||   |||||||||||||||| ||| ||||| | | | |||| |  ||    
T  19457379 aaattatgtgttttggaaagatgataatgtccacaaatcacaaggggaggaaaatccaacaaattcttccaatcaaaatgaagagttttctaaagtggaa 19457478  T
Q  310 gttacatgtgatggattcaatataattgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtatgatgtga 409  Q
     || ||||||||| |||| ||| | || |||||||| |  |||||| ||||||||||||||| | ||| |||||||||||||| || |||||||||| ||    
T  19457479 attccatgtgatgaattctatagatttatttttgacaccagaggtaatcaagctataaattcaaagtctaattctcttgaagaaggggagtatgatggga 19457578  T
Q  410 tcctaa 415  Q
     |||||    
T  19457579 acctaa 19457584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 19458894 - 19459068
Alignment:
Q  12 aaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgt 111  Q
    |||||||| ||||| |||||||||||||||| ||||||  ||  ||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  19458894 aaaggagattgagaaggaaaaggaagagaaatatgttggaaaattttggcctactattgcattagtacattcttctaagttggtttgtgttttcaaatgt 19458993  T
Q  112 tgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatgaaggaaac-aaatagaatgaagaaa 187  Q
    ||||||| |||||   |||||||||||||| |  | |||||||||||| ||||||||||| ||| ||||||||||||    
T  19458994 tgggatttttctttttatattattcaattgcc--aaatttctttatgtaatgaaggaaacaaaagagaatgaagaaa 19459068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 406
Target Start/End: Original strand, 19459185 - 19459277
Alignment:
Q  314 catgtgatggattcaatataattgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtatgatg 406  Q
    ||||||||| |||| ||| | || ||||||| || | ||||||||||| |||||||||||||||||||| |||||||| ||| ||||||||||    
T  19459185 catgtgatgcattctatagatttatttttgatcccgaaggtattcaagatataaattcgaggtcgaattttcttgaagtgggggagtatgatg 19459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 11098469 - 11098505
Alignment:
Q  402 tgatgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  11098469 tgatgtgatcctaagatgttctccctttacaagaata 11098505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 42873142 - 42873106
Alignment:
Q  402 tgatgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  42873142 tgatgtgatcctaagatgttctccctttacaagaata 42873106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 438
Target Start/End: Complemental strand, 18281457 - 18281423
Alignment:
Q  404 atgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||    
T  18281457 atgtgatcctaagatgttctccctttacaagaata 18281423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 415
Target Start/End: Complemental strand, 20189901 - 20189498
Alignment:
Q  12 aaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgt 111  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||  || |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  20189901 aaaggagaatgagaaggaaaaggaagagaaaaatgttgggaagtttttccctactattacattagtacattcttctaagttggtttgtgttttcaaatgt 20189802  T
Q  112 tgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaa 211  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||| ||    
T  20189801 tgggattgttcttctaatattattcaattgcctaacatttctttatgtcgtgaaggaaacaaagagaatgaataaactttttctcaacaggtggaaggaa 20189702  T
Q  212 attatgaaatatggaacgatgatcatgtccataaatcaaaagtggatgaaaagaaaacaaattcttccaataaaagtgaagtgctctttaaatttaaagt 311  Q
    ||||||| || ||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||    
T  20189701 attatgagatttggaacgatgatcatgtccatacttcaaaagtggatgaaaagaaaacaatttcttccaataaaagtgaagagctctctaaagttaaagt 20189602  T
Q  312 tacatgtgatggattcaatataattgtttttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtatgatgtgatc 411  Q
    ||||||||||| |||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20189601 tacatgtgatgaattctatagatttgtttttgacccatgaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtatgatgtgatc 20189502  T
Q  412 ctaa 415  Q
    ||||    
T  20189501 ctaa 20189498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 22063318 - 22063128
Alignment:
Q  27 ggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttca 126  Q
    ||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||     
T  22063318 ggaaaaggaagagaaaaatgttgggaagttttggcctactattacattagtaccttcttctaagttggtttgtgttttcagatgttgggattcttcttct 22063219  T
Q  127 aatattattcaattgtctaacatttctttatgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaaattatg 217  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||   |||| |||||||| |||| ||||||||    
T  22063218 aatattattcaattgcctaacatttctttatgtcatgaaggaaacaaagagaatgaagaaaaaatttcccaacaagttgaaggaaattatg 22063128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 40554769 - 40554732
Alignment:
Q  401 atgatgtgatcctaagatgttctccctttacaagaata 438  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40554769 atgatgtgatcctaagatgttctccctttacaagaata 40554732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 31390119 - 31390155
Alignment:
Q  402 tgatgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  31390119 tgatgtgatcctaagatgttctccctttacaagaata 31390155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 31390614 - 31390578
Alignment:
Q  402 tgatgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  31390614 tgatgtgatcctaagatgttctccctttacaagaata 31390578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 40553873 - 40553909
Alignment:
Q  402 tgatgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  40553873 tgatgtgatcctaagatgttctccctttacaagaata 40553909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1778 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold1778
Description:

Target: scaffold1778; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 1210 - 1370
Alignment:
Q  3 aggagtagcaaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgtt 102  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  1210 aggagaagaaaaggagaatgagatggaaaaggaagagaaaaatgttgagaagttttggcctactattacattagtaccttcttctaaattggtttgtgtt 1309  T
Q  103 ttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatg 163  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  1310 ttcaaatgttgggattcttcttctaatattattcaattgcctaacatttctttatgtcatg 1370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 16348059 - 16348161
Alignment:
Q  3 aggagtagcaaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgtt 102  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  16348059 aggagaagaaaaggagaatgagatggaaaaggaagagaaaaatgttgacaagttttggcctactattacattagtaccttcttctaaattggtttgtgtt 16348158  T
Q  103 ttc 105  Q
    |||    
T  16348159 ttc 16348161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 16346444 - 16346333
Alignment:
Q  12 aaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgt 111  Q
    ||||| || ||||| || ||| |||||||||||||||| |||| ||||||| ||||||||| |||||||||| || || ||||| |||||  | ||||||    
T  16346444 aaaggtgagtgagaaggtaaatgaagagaaaaatgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgt 16346345  T
Q  112 tgggattcttct 123  Q
    |||| |||||||    
T  16346344 tggggttcttct 16346333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 16020225 - 16020185
Alignment:
Q  366 aaattcgaggtcgaattctcttgaagagggagagtatgatg 406  Q
    |||||||||| |||||||| | |||||||||||||||||||    
T  16020225 aaattcgaggacgaattctttcgaagagggagagtatgatg 16020185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 8570 - 8690
Alignment:
Q  3 aggagtagcaaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgtt 102  Q
    ||||| || ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| || || ||||| |||||     
T  8570 aggagaagaaaaagagaatgagatggaaaaggaagagaaaaatgttgagaagttttggcctactattacactagtaccttcatcaaagttggtatgtgta 8669  T
Q  103 ttcaaatgttgggattcttct 123  Q
     | || |||||| ||||||||    
T  8670 gttaattgttggaattcttct 8690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 17277585 - 17277660
Alignment:
Q  340 tttgacccaggaggtattcaagctataaattcgaggtcgaattctcttgaagagggagagtatgatgtgatcctaa 415  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  17277585 tttgactcaggagctattcaagctataaattcaaggtcgaattctcttgaggagggagagtatgatgtgatcctaa 17277660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 440
Target Start/End: Complemental strand, 23016809 - 23016770
Alignment:
Q  401 atgatgtgatcctaagatgttctccctttacaagaatatt 440  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23016809 atgatgtgatcctaagatgttctccctttacaagaatatt 23016770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 23016474 - 23016436
Alignment:
Q  402 tgatgtgatcctaagatgttctccctttacaagaatatt 440  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23016474 tgatgtgatcctaagatgttctccctttacaagaatatt 23016436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 17857133 - 17857169
Alignment:
Q  402 tgatgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  17857133 tgatgtgatcctaagatgttctccctttacaagaata 17857169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 20417008 - 20417096
Alignment:
Q  35 aagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttct 123  Q
    ||||||||||||||| || | ||||||| |||||||||||||||||||| || || ||||| |||||  | ||||||||||||||||||    
T  20417008 aagagaaaaatgttgggatgttttggcctactattacattagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct 20417096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 20416159 - 20416048
Alignment:
Q  12 aaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgt 111  Q
    ||||| || ||||| || ||| |||||||||||||||| || | ||||||| |||||||||||| ||||||| || || ||||| |||||  | ||||||    
T  20416159 aaaggtgagtgagaaggtaaatgaagagaaaaatgttgggatgttttggcctactattacattaataccttcatcaaagttggtatgtgtagttaaatgt 20416060  T
Q  112 tgggattcttct 123  Q
    ||||||||||||    
T  20416059 tgggattcttct 20416048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 20418731 - 20418620
Alignment:
Q  12 aaaggagaatgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgt 111  Q
    ||||| || ||||| || ||| |||||||||||||||| |||| ||||||| ||||||||| |||||||||| || || ||||| |||||  | ||||||    
T  20418731 aaaggtgagtgagaaggtaaatgaagagaaaaatgttgggaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaaatgt 20418632  T
Q  112 tgggattcttct 123  Q
    |||| |||||||    
T  20418631 tggggttcttct 20418620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 440
Target Start/End: Complemental strand, 11512 - 11473
Alignment:
Q  401 atgatgtgatcctaagatgttctccctttacaagaatatt 440  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11512 atgatgtgatcctaagatgttctccctttacaagaatatt 11473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 34302 - 34404
Alignment:
Q  21 tgagatggaaaaggaagagaaaaatgttgagaagatttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattct 120  Q
    ||||| || ||| |||||||||||||||| |||| ||||||| ||||||||| |||||||||| || || ||||| |||||  | || |||||| |||||    
T  34302 tgagaaggtaaatgaagagaaaaatgttgtgaagttttggcctactattacactagtaccttcatcaaagttggtatgtgtagttaattgttggaattct 34401  T
Q  121 tct 123  Q
    |||    
T  34402 tct 34404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 5190 - 5226
Alignment:
Q  402 tgatgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  5190 tgatgtgatcctaagatgttctccctttacaagaata 5226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 4195 - 4231
Alignment:
Q  402 tgatgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  4195 tgatgtgatcctaagatgttctccctttacaagaata 4231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 375422 - 375386
Alignment:
Q  402 tgatgtgatcctaagatgttctccctttacaagaata 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  375422 tgatgtgatcctaagatgttctccctttacaagaata 375386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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