View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_high_4 (Length: 410)
Name: NF4493_high_4
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 2 - 400
Target Start/End: Complemental strand, 34683477 - 34683079
Alignment:
| Q |
2 |
cttcctcggcaaccttcttctttgacggcgaggaatagtatttgcgaagacactcaatacttaaatttgtatttgtaagcatcgtggaccaaaaacgatc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683477 |
cttcctcggcaaccttcttctttgacggcgaggaatagtatttgcgaagacactcaatacttaaatttgtatttgtaagcatcgtggaccaaaaacgatc |
34683378 |
T |
|
| Q |
102 |
aacgtttaacgattgaattgatttacaatttactattgaaattcaaagacttaacatatctttagtgaactttcaccctcactctacgaagctttaatgt |
201 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683377 |
aacttttaaagattgaattgatttacaatttactattgaaattcaaagacttaacatatctttagtgaactttcaccctcactctacgaagctttaatgt |
34683278 |
T |
|
| Q |
202 |
tgaacattgagcaaactgaatgctaccatatttgtgggcgttttttgttcgcccaagaactttccatttacggtggatgacactgccttcgacactgtca |
301 |
Q |
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| T |
34683277 |
tgaacattgagcaaactgaatgctaccatatttgtgggcgtttttggttcgcccaagaactttccatttacggtggatgacactgccttcgacactgtca |
34683178 |
T |
|
| Q |
302 |
ttgtcatcaaagcctcataaagactcaaatggttgcgatattttgcatttgttcttctgacaacttcaagtttctaaaatccccatgtttttccctttg |
400 |
Q |
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| T |
34683177 |
ttgtcatcaaagcctcataaagactcaaatggttgcgatattttgcatttgttcttctgacaacttcaagtttctaaaatccccatgtttttccctttg |
34683079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 216 - 398
Target Start/End: Complemental strand, 26980882 - 26980698
Alignment:
| Q |
216 |
actgaatgctaccatatttgtgggcgttttttgttcgcccaagaactttccatttacggtggatgacactgccttcgacactgtcatt---gtcatcaaa |
312 |
Q |
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| T |
26980882 |
actgaatgctaccatatttgtgggcgtttttggttcgcccaataactttccatttacggtggatgacactgccttcgacactgtcattgtcgtcatcaaa |
26980783 |
T |
|
| Q |
313 |
gcctcataaagactcaaatggttgcgatattttgcatttgttcttctgacaacttcaagtttctaaaatccccatgtttttccctt |
398 |
Q |
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| T |
26980782 |
gcctcat-aagactcaaatggttgtgatattttgcatttgttcttctgacaacttcaagtttctaaaatccccatgtttttccctt |
26980698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 98 - 380
Target Start/End: Original strand, 27083941 - 27084221
Alignment:
| Q |
98 |
gatcaacgtttaacgattgaattgatttacaatttactattgaaattcaaagacttaacatatctttagtgaactttcaccctcactctacgaagcttta |
197 |
Q |
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| T |
27083941 |
gatcaatgtttaaagattgaattgttttacaatttactgctcaaattcaaagacttaacttatcattattgat-tttcacccttactctaggaagcttta |
27084039 |
T |
|
| Q |
198 |
atgttgaacattgagcaaactgaatgctaccatatttgtgggcgttttttgttcgcccaagaactttccatttacggtggatgacactgccttcgacact |
297 |
Q |
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|||||||||||||| |||||| |||| |||||| ||||||||| || |||||||||||| |||||||||||||| ||||||| |||||| | ||| |
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| T |
27084040 |
atgttgaacattgaacaaacttaatgagaccataattgtgggcgccgttggttcgcccaagaggtttccatttacggttcatgacaccgccttctatact |
27084139 |
T |
|
| Q |
298 |
gtcattgtcatcaaagcctcataaagactcaaatggttgcgatattttgcatttgttcttctgacaacttcaagtttctaaaa |
380 |
Q |
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|||||||||||||| || |||||| |||| ||||||||||| ||||| ||||| |||||| ||| ||||| |||||||||| |
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| T |
27084140 |
atcattgtcatcaaaaccgcataaa-actcgaatggttgcgacattttccatttcttcttcggacgacttctggtttctaaaa |
27084221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 27022332 - 27022203
Alignment:
| Q |
92 |
aaaaacgatcaacgtttaacgattgaattgatttacaatttactattgaaattcaaagacttaacatatctttagtgaactttcaccctcactctacgaa |
191 |
Q |
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|||| ||||||| |||||| ||||| || ||||| |||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||| ||| |
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| T |
27022332 |
aaaagcgatcaatgtttaaagattggatcgatttccaatttacggctgaaattcaaagacttaacatatctttcgttaactttgaccctcactctaggaa |
27022233 |
T |
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| Q |
192 |
gctttaatgttgaacattgagcaaactgaa |
221 |
Q |
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| T |
27022232 |
gctttaatgttgaacattgaacaaactgaa |
27022203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 26981150 - 26981067
Alignment:
| Q |
2 |
cttcctcggcaaccttcttctttgacggcgaggaatagtatttgcgaagacactcaatacttaaatttgtatttgtaagcatcg |
85 |
Q |
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|||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26981150 |
cttcgtcggcaatcttcttctttgacggcaaggaatagtatttgcgaacacactcaatacttaaatttgtatttgtaagcatcg |
26981067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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