View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_high_8 (Length: 355)
Name: NF4493_high_8
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 4 - 339
Target Start/End: Original strand, 40021383 - 40021717
Alignment:
| Q |
4 |
tgaaatttcttattaattgttgaattactatctacaaatagtatgcagggtttagggtgttacaaatatcttcaaagtcaatgtaaaagagcaactacag |
103 |
Q |
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| T |
40021383 |
tgaaatttcttattaattgttgaattactatctacaaatagtatgcagggtttagggtgttacatatatcttcaaaaccaatgtaaaagagcaactacag |
40021482 |
T |
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| Q |
104 |
aagcatgaagagggattctaaagagtcgaaaccaaattatcatttcccgattggaggtcattacgtgccaagctttaaaatatgtgaaaaatgctctnnn |
203 |
Q |
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| T |
40021483 |
aagcatggagagggattccaaatagtcgaaaccaaattatcatttcccgattggaggtcattaggtgccaagctttaaaatctgtgaaaaatgctct-aa |
40021581 |
T |
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| Q |
204 |
nnnnnttaattgcatcattaatcaccttcctcgccccattattaccatatgttgtaacaaaaaccatgactcctcccataggcaccacttgaatatctat |
303 |
Q |
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| T |
40021582 |
aaaaatcaattgcatcattaatcaccttcctccccccattattaccatatgttgtaacaaaaaccatgactccttccacatgcaccacttgaatatctat |
40021681 |
T |
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| Q |
304 |
caaacacgcatcctgaatacgttcttgtaacaactg |
339 |
Q |
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| T |
40021682 |
caaacacgcatcctgaatgcgttgttgtaacaactg |
40021717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 11262061 - 11262005
Alignment:
| Q |
10 |
ttcttattaattgttgaattactatctacaaatagtatgcagggtttagggtgttac |
66 |
Q |
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| T |
11262061 |
ttcttattaattgttgaattattatttaaaaatagtatgcagggtttagggtgttac |
11262005 |
T |
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