View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_low_1 (Length: 617)
Name: NF4493_low_1
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_1 |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 198 - 600
Target Start/End: Original strand, 9469741 - 9470136
Alignment:
| Q |
198 |
tccctctttctctcacatcgaactccccaaaaccagacaccatgttcgtcttcactgcctcaccaaccaccctccaccgtctcagccaccaacatcaaac |
297 |
Q |
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| T |
9469741 |
tccctctttctctcacatcgaactccccaaaaccagacaccatgttcgtcttcactgcctcaccaaccaccctcc----tctcagccaccaacatcaaac |
9469836 |
T |
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| Q |
298 |
ccttcatcatcgtcaaactaacccttcgtcgtcatcatcaaatccttgaattttttggtattctgtttgtgttctatatggttgaagatgaattgatgtt |
397 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9469837 |
ccttcatcctcgtcaaactaacccttcgtcgtcatcatcaaatccttgaattttttggtattctgtttgtgttctatatggttgaagatgaattgatgtt |
9469936 |
T |
|
| Q |
398 |
gttcaaaactaaatcactaggcagattttatatgaaagtaagatctaataagattcattttattaaaaacatgttgctatttggaatattgacgcaatgc |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9469937 |
gttcaaaactaaatcactaggcagattttatatgaaagtatgatctaataagattcattttattaaaaacatgttgctatttggaatattgacgcaatgc |
9470036 |
T |
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| Q |
498 |
caacgtctgattgaactagttattcaaggttatatcgactccttgtttctctaaatttcatttttctataattcaaacttaaaaaagaatcaattgtcac |
597 |
Q |
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| T |
9470037 |
caacgtctgattgaactagttattcaaggttatatcgactccttgtttctctaaatttcatttttct---attcaaacttaaaaaagaatcaattgtcac |
9470133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 54088485 - 54088374
Alignment:
| Q |
1 |
aacctgctcctgccccagcccctgaccctgcacgagatcctgcatgggagctggcttcagaacctgctccagaagaccctgatcccgatcctgatcctga |
100 |
Q |
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| T |
54088485 |
aacctgctcctgacccagcccctgaccctgcacgagatcctgcatgggagccggcttcagaacctgctccagaagaccctgatcccgatcctgatcctga |
54088386 |
T |
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| Q |
101 |
agtggaagccga |
112 |
Q |
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| T |
54088385 |
agtggaagccga |
54088374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 491 - 583
Target Start/End: Original strand, 2530793 - 2530881
Alignment:
| Q |
491 |
gcaatgccaacgtctgattgaactagttattcaaggttatatcgactccttgtttctctaaatttcatttttctataattcaaacttaaaaaa |
583 |
Q |
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| T |
2530793 |
gcaatgtcaaagtctgattgaactagttattcaaggttata-ccactccttgtttctctaaatttcatttttc---aattcaaacttaaaaaa |
2530881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 491 - 600
Target Start/End: Complemental strand, 31001903 - 31001796
Alignment:
| Q |
491 |
gcaatgccaacgtctgattgaactagttattcaaggttatatcg-actccttgtttctctaaatttcatttttctataattcaaacttaaaaaagaatca |
589 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||| | |
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| T |
31001903 |
gcaatgccaaagtccgattgaactagttattcaaggttatatcgtaatccttgtttctctaaatttcatttttct---attcaaacttaaagaagaataa |
31001807 |
T |
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| Q |
590 |
attgtcacaac |
600 |
Q |
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| T |
31001806 |
gttgtcacaac |
31001796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 491 - 600
Target Start/End: Complemental strand, 31003528 - 31003421
Alignment:
| Q |
491 |
gcaatgccaacgtctgattgaactagttattcaaggttatatcg-actccttgtttctctaaatttcatttttctataattcaaacttaaaaaagaatca |
589 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||| | | ||| |||||||||||||||||||||||| ||||||||||||| |||||| | |
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| T |
31003528 |
gcaatgccaaagtctgattgaactagttattcaagattatattgtaatccctgtttctctaaatttcatttttct---attcaaacttaaagaagaataa |
31003432 |
T |
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| Q |
590 |
attgtcacaac |
600 |
Q |
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|||||||||| |
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| T |
31003431 |
gttgtcacaac |
31003421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 493 - 583
Target Start/End: Complemental strand, 39165 - 39075
Alignment:
| Q |
493 |
aatgccaacgtctgattgaactagttat--tcaaggttatatcg-actccttgtttctctaaatttcatttttctataattcaaacttaaaaaa |
583 |
Q |
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|||||||| ||||||| |||||| |||| ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39165 |
aatgccaaagtctgatggaactaattatattcaaggttataccatactccttgtttctctaaatttcatttttct---attcaaacttaaaaaa |
39075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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