View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_low_11 (Length: 339)
Name: NF4493_low_11
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 46810938 - 46811268
Alignment:
| Q |
1 |
tcaatattaacaattacaaccaatttgttatgtctccttcgccacatcgtataatttattcggctgaaagctcaactgatctttttcaaagatcaaacta |
100 |
Q |
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| T |
46810938 |
tcaatagtaacaattacaaccaatttgttatgtctccttcgccacatcgtataatttgttcggctgaaagcccaactgatctttttcaaagatcaaacta |
46811037 |
T |
|
| Q |
101 |
aactcaatttaattaaagatagattatcaattggttacctattttcaattttagattaattaatcatatttccgagcttcaactcaattatgttgtaacc |
200 |
Q |
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| T |
46811038 |
aactcaatttaattaaagatagattatcaattggttacctatttccaattttagattaattaatcatatttcccagcttcaactcaatta---tgaaacc |
46811134 |
T |
|
| Q |
201 |
tataactaatcatacattgatcaagcataatcatacactcaaactgaaacaataattaaatgtgaagagaaaaaagacattgaatgactagaaccactat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46811135 |
tataactaatcatacattgatcaagcataatcatacactcaaactgaaacaataattaaatgtgaagagaaaaaagacattgaatgactagaaccactat |
46811234 |
T |
|
| Q |
301 |
agaggcagggggctgtgatttgtgtgagtaaagt |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
46811235 |
agaggcagggggctgtgatttgtgtgagtaaagt |
46811268 |
T |
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