View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_low_13 (Length: 321)
Name: NF4493_low_13
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 40998156 - 40997869
Alignment:
| Q |
17 |
atagcaaggtaacaaaagaact-gagaaaaa-ccaaactaaaatcgtttaaaccagtaaaaatccaggattgagctagttaagtaagttggaccgaattt |
114 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40998156 |
atagcaaggtaacaaaagaacttgagaaaaaaccaaactaaaatcgtttaaaccagtcaaaatccacgattgagctagttaagtaagttggaccgaattt |
40998057 |
T |
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| Q |
115 |
tgtaaatgttgcaccgacacattgtgatgatttgtctatgcattaaaagattacataacatatcatttattttacgttgcaatgactcatagactgaatc |
214 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40998056 |
tgtaaatgttgcacctacacattgtgatgatttgtctatgcattaaaa-attacagaacatatcatttattttacgttgcaatgactcatagactgaatc |
40997958 |
T |
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| Q |
215 |
ttgattcttcatgtttgattcaaaaaccaagagagcagtgctcatttcgcagaaatatataaacaataataatcaccattaaaaaatta |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40997957 |
ttgattcttcatgtttgattcaaaaaccaagagagcagtgctcatttcgcagaaatatataaacaataataatcaccattaaaaaatta |
40997869 |
T |
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