View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_low_14 (Length: 308)
Name: NF4493_low_14
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 34078978 - 34078697
Alignment:
| Q |
18 |
gaaccctaggtataggaagaagaagattgaggaaatgggagtgacagaagaggaatatttggcgaagcaatttgagattaaggaagatgttccggaggag |
117 |
Q |
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| T |
34078978 |
gaaccctaggtataggaagaagaagattgaggaaatgggagtgacagaagaggaatatttggcgaagcaatttgagattaaggaagatgttccggaggag |
34078879 |
T |
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| Q |
118 |
ttggagactaagtgggcaggaccgttggtggtgaagttggtgccgccgagggattggccgccgagagggtgggaggtggatcgtgaagagctcgcgttta |
217 |
Q |
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| T |
34078878 |
ttggagactaagtgggcaggaccgttggtggtgaagttggtgccgccgagggattggccgccgagagggtgggaggtggatcgtgaagagctcgcgttta |
34078779 |
T |
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| Q |
218 |
ttcgtgaagcgcataagatggaggcaaagagggtgaggttggaggatattgaaaatggtgttagaactgaaactgatgatgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34078778 |
ttcgtgaagcgcataagatggaggcaaagagggtgaggttggaggatattgaaaatggtgttagaactgaaactgatgatgt |
34078697 |
T |
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