View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4493_low_15 (Length: 308)
Name: NF4493_low_15
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 35280028 - 35280325
Alignment:
| Q |
1 |
aaaagcaaagtctcttctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35280028 |
aaaagcaaagtctcttctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaatta |
35280127 |
T |
|
| Q |
101 |
agaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaa |
200 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
35280128 |
agaagtcctttattagcaactagatccctataataattgttgtcaaaagtaacaggagagacagaatcaagaggagccaaatttgtgtcaccgccagaaa |
35280227 |
T |
|
| Q |
201 |
gaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35280228 |
gaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatg |
35280325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 298
Target Start/End: Original strand, 35289377 - 35289670
Alignment:
| Q |
5 |
gcaaagtctcttctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaatgaagaa |
104 |
Q |
| |
|
|||||||||||| ||||||||| | |||| ||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35289377 |
gcaaagtctcttttaaaagcaatattatttctactataagtcctaaccaaagaaacttgagaaccaacaccattgaaaagagcttgatcagaatgaagaa |
35289476 |
T |
|
| Q |
105 |
gtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagagg |
204 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
35289477 |
gtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggtgccaaatttatgtcaccaccagaagtagg |
35289576 |
T |
|
| Q |
205 |
acagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatg |
298 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
35289577 |
acaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaaattgacattctgcttgacctatg |
35289670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 282
Target Start/End: Original strand, 35275264 - 35275542
Alignment:
| Q |
4 |
agcaaagtctcttctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaatgaaga |
103 |
Q |
| |
|
|||||||||||| ||||||| ||||| | ||||||| |||||||||||||| | |||||||| ||||||||||||| ||||||||||||| ||| |
|
|
| T |
35275264 |
agcaaagtctctagaaaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtaga |
35275363 |
T |
|
| Q |
104 |
agtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagag |
203 |
Q |
| |
|
|| ||||||||||||| ||||||| |||| ||||| |||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||||| || |
|
|
| T |
35275364 |
agacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtag |
35275463 |
T |
|
| Q |
204 |
gacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgaca |
282 |
Q |
| |
|
| || ||| |||||||||||| || |||||| |||| ||||| | |||||||| ||||||||||| |||||||||||| |
|
|
| T |
35275464 |
ggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattgaca |
35275542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 76 - 298
Target Start/End: Original strand, 35307246 - 35307468
Alignment:
| Q |
76 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
175 |
Q |
| |
|
||||||||| |||||||||||||| | ||| ||||| | |||||||||| |||||||||| || |||||| | ||||| || || |||||| ||| |
|
|
| T |
35307246 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggt |
35307345 |
T |
|
| Q |
176 |
gccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaa |
275 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
35307346 |
gctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
35307445 |
T |
|
| Q |
276 |
attgacattctgcttggcctatg |
298 |
Q |
| |
|
|||| || ||| ||||||||||| |
|
|
| T |
35307446 |
attggcactctccttggcctatg |
35307468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 35322178 - 35322469
Alignment:
| Q |
4 |
agcaaagtctcttctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaatgaaga |
103 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||||||| |||||||||| | || |||| ||| | |||||||| |||||||||||||| | | |
|
|
| T |
35322178 |
agcaaagtctcttctaaaagtagcaccattggtactataactcctaaccaaattatcttgagacccatta---ttgaaaagagcttgatcagaatggaaa |
35322274 |
T |
|
| Q |
104 |
agtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagag |
203 |
Q |
| |
|
|| ||||| | |||||||| | |||||||||| ||||||||| | ||||| || || ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
35322275 |
agacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggtgctaaattggtgtcaccaccagaaagag |
35322374 |
T |
|
| Q |
204 |
gacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatg |
298 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| || ||| ||||||||||| |
|
|
| T |
35322375 |
gacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
35322469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 298
Target Start/End: Original strand, 35311589 - 35311814
Alignment:
| Q |
76 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
175 |
Q |
| |
|
||||||||| ||||||||||||| | || ||||| | |||||||||| |||| ||||| ||||||||| | ||||| || || |||||| ||| |
|
|
| T |
35311589 |
attgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggt |
35311688 |
T |
|
| Q |
176 |
gccaaatttgtgtcac---caccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcgga |
272 |
Q |
| |
|
|| ||||| |||||| ||| ||||| || |||||| | ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| || |
|
|
| T |
35311689 |
gctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctga |
35311788 |
T |
|
| Q |
273 |
aaaattgacattctgcttggcctatg |
298 |
Q |
| |
|
| ||| |||| ||| ||||||||||| |
|
|
| T |
35311789 |
acaatcgacactctccttggcctatg |
35311814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University