View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_low_16 (Length: 303)
Name: NF4493_low_16
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 6973924 - 6973640
Alignment:
| Q |
1 |
aaggcctattatatactgttaaatagtgggggcaactggggtgaagtcttctcttttcctttttaatttaaaaataataaataaattcaaggcctattat |
100 |
Q |
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| T |
6973924 |
aaggcctattatatactgttaaatagtgggggcaactggagtgaagtcttctcttttcctttttaatttaaaaataataaataaattcaaggcctattat |
6973825 |
T |
|
| Q |
101 |
atactgttnnnnnnnggttggcctttaagatgggtcaactatatggtgcatgcccgtggatgacaaacgcctaactatattaaatacagaactcttatat |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6973824 |
atactgttaaaaaaaggttggcctttaagatgggtcaactatatgctgcatgcccatggatgacaaacgcctaactatattaaatacagagctcttatat |
6973725 |
T |
|
| Q |
201 |
gaaatttgtctggttaaacgttattctataatataataaatgttcaaatagttggataattcagttaatctttgatacggtgagatt |
287 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6973724 |
gaaatttgtctggttaaacgttattctata--ataataaatgttcaaatagtcggataattcagttaatctttgatacggtgagatt |
6973640 |
T |
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