View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_low_19 (Length: 261)
Name: NF4493_low_19
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 36529784 - 36530029
Alignment:
| Q |
18 |
gaagcagtgcacaaaagtacaagaacataaacatcttgattttcatccttgctataa-tcaagagtttatggtgaaatatgaatacaattgataactatt |
116 |
Q |
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| T |
36529784 |
gaagcagtgcacaaaagtacaagaacataaacatcttgattttcattcttgctataaattaagactttgttttgaaatatgaatacaaatgatagctatt |
36529883 |
T |
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| Q |
117 |
tatataatgatcatgggacaagataaaatataagaagaacaagaga-nnnnnnnnnactccaataacaaaaatagcttgattaaaaataatatgttgtac |
215 |
Q |
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| T |
36529884 |
tatataatgatcatgggacaagataaaatataagaagaacaagagagattttttttactccaataacaaaaatagcttgattaaaaataatatgttgtac |
36529983 |
T |
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| Q |
216 |
catgaaaaagataacataaattgcacggcaaaacaaacacaaaata |
261 |
Q |
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| T |
36529984 |
catgaaaaagataacataaattgcacggcaaaacaaacacaaaata |
36530029 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 19425644 - 19425612
Alignment:
| Q |
88 |
gtgaaatatgaatacaattgataactatttata |
120 |
Q |
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| T |
19425644 |
gtgaaatatgaatacaattgatagctatttata |
19425612 |
T |
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