View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_low_22 (Length: 250)
Name: NF4493_low_22
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 44624343 - 44624451
Alignment:
| Q |
1 |
tttagaatctcttaagtgnnnnnnnctcttgtatttttatccataactaaagggttaaacctaaaactaatatggtattgctaatgatagattagtatat |
100 |
Q |
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| T |
44624343 |
tttagaatctcttaagtgaaaaaaactcttgtatttttatccataactaaagggttaaacctaaaactaatatggtattgctaatgatagattagtatat |
44624442 |
T |
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| Q |
101 |
taatgtaca |
109 |
Q |
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||||||||| |
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| T |
44624443 |
taatgtaca |
44624451 |
T |
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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 44624461 - 44624535
Alignment:
| Q |
167 |
acactactccaacgattcagttaaggttctatatcgactttaaactgttagaatatatcttttttaattcctatg |
241 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44624461 |
acactactccaatgattcagttaaggttttatatcgactttaaactgttagaatatatctttttgaattcctatg |
44624535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 44950985 - 44950907
Alignment:
| Q |
26 |
ctcttgtatttttatccataactaaagggttaaacctaaaactaatatggtattgctaatgatagattagtatattaatgtac |
108 |
Q |
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|||||| |||||||||||| ||||| || |||| ||||||| |||||||| || ||||||||||||||||||||||||||| |
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| T |
44950985 |
ctcttgcatttttatccattactaa-ggtttaatcctaaaa---atatggtactggtaatgatagattagtatattaatgtac |
44950907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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