View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_low_23 (Length: 241)
Name: NF4493_low_23
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_23 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 34683701 - 34683479
Alignment:
| Q |
19 |
gcatatcctatcttgttacctacatctagtcctcgtgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatgaaggagata |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34683701 |
gcatatcctatcttgttacctacatctagtcctcgtgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatggaggagata |
34683602 |
T |
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| Q |
119 |
gactcactaatgtgggatgggaacaaggagctggagtgtactctttgccgaccctgccccgttgacatcccgtcagatctgagatattttgatggtggtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683601 |
gactcactaatgtgggatgggaacaaggagctggagtgtactctttgccgaccctgccccgttgacatcccgtcagatctgagatattttgatggtggtg |
34683502 |
T |
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| Q |
219 |
ttgaatggcctctaggtgtagga |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
34683501 |
ttgaatggcctctaggtgtagga |
34683479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 26981374 - 26981152
Alignment:
| Q |
19 |
gcatatcctatcttgttacctacatctagtcctcgtgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatgaaggagata |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26981374 |
gcatatcctatcttgttacctacatctagtcctcttgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatggaggagata |
26981275 |
T |
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| Q |
119 |
gactcactaatgtgggatgggaacaaggagctggagtgtactctttgccgaccctgccccgttgacatcccgtcagatctgagatattttgatggtggtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||||||||||||||| |
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| T |
26981274 |
gactcactaatgtgggatgggaacaaggagctggagtgtactttttgccgaccctgccccgttgacatctcctgtcatctgagatattttgatggtggtg |
26981175 |
T |
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| Q |
219 |
ttgaatggcctctaggtgtagga |
241 |
Q |
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| T |
26981174 |
ttgaatggcctctaggtgtagga |
26981152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 27082686 - 27082815
Alignment:
| Q |
19 |
gcatatcctatcttgttacctacatct--agtcctcgtgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatgaaggaga |
116 |
Q |
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|||||||||||||||||||| |||||| ||||||| ||||||| ||| |||| |||| ||||| ||||| ||||||||||||||||||| | ||| |
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| T |
27082686 |
gcatatcctatcttgttaccaacatctctagtcctcatgtttaaccat--gagagtttcttccactaaaatggaatctagatatataaagacagggaaga |
27082783 |
T |
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| Q |
117 |
tagactcactaatgtgggatgggaacaaggag |
148 |
Q |
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|| |||||| |||||||||||||||||||||| |
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| T |
27082784 |
taaactcaccaatgtgggatgggaacaaggag |
27082815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 27022805 - 27022764
Alignment:
| Q |
19 |
gcatatcctatcttgttacctacatctagtcctcgtgtttaa |
60 |
Q |
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| T |
27022805 |
gcatatcctatctcgttaccaacatctagtcctcatgtttaa |
27022764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 30219727 - 30219683
Alignment:
| Q |
65 |
atgagattttcatccacaaaaattgaatctagatatataaagatg |
109 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
30219727 |
atgagattttcatcccctaaaattgaatctagatatataaagatg |
30219683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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