View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4493_low_24 (Length: 240)
Name: NF4493_low_24
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44624357 - 44624138
Alignment:
| Q |
1 |
ttaagagattctaaaaatgttcaagtgtgaaaagtataatccaaattaatttgacannnnnnnnnnnnnnnnnnnnnnncgcgcgcgtttgatatggaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44624357 |
ttaagagattctaaaaatgttcaagggtgaaaagtataatccaaattaatttgacagtgtgtgtatgagtgtgtgtgcgcgcgcgcgtttgatatggaaa |
44624258 |
T |
|
| Q |
101 |
ttgtacaagcttttcaacttgactaggatatgctgcattaacatcattaacnnnnnnnnnctaatatatagatctggttattaaaaatatcaacatcaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44624257 |
ttgtacaagcttttcaacttgactaggatatgctgcattaacatcattaac-aaaaaaaactaatatatagatctggttattaaaaatatcaacatcaat |
44624159 |
T |
|
| Q |
201 |
aaaagaaagatgaatagcaac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
44624158 |
aaaagaaagatgaatagcaac |
44624138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 44614943 - 44614887
Alignment:
| Q |
163 |
aatatatagatctggttattaaaaatatcaacatcaataaaagaaagatgaatagcaac |
221 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
44614943 |
aatatgtagatcaggttattaaaaatatcaacatcaataaa--atagatgaatagcaac |
44614887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 45342271 - 45342226
Alignment:
| Q |
163 |
aatatatagatctggttattaaaaatatcaacatcaataaaagaaa |
208 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
45342271 |
aatatgtagatcaggttattaaaaatatcaacatcaacaaaagaaa |
45342226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 45342335 - 45342290
Alignment:
| Q |
105 |
acaagcttttcaacttgactaggatatgctgcattaacatcattaa |
150 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
45342335 |
acaagcttttcaacttgactaagatatactacattaacatcattaa |
45342290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University