View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4493_low_27 (Length: 236)
Name: NF4493_low_27
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 570469 - 570586
Alignment:
| Q |
103 |
ccacttcatggatattccattagtgaaaaatactnnnnnnnctacaaaataatctaactgaccatgatagaaattaaaccattggtgcaagtcaccaagt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
570469 |
ccacttcatggatattccattagtgaaaaatactaaaaaaactacaaaataatctaactgaccatgatagaaattaaaccattggtgcaagtcaccaagt |
570568 |
T |
|
| Q |
203 |
ctttaaaacggctgaaag |
220 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
570569 |
ctttaaaacggctgaaag |
570586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 570367 - 570397
Alignment:
| Q |
1 |
caaaacaggcccccgcacaagctatacaagt |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
570367 |
caaaacaggcccccgcacaagctatacaagt |
570397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 15102644 - 15102760
Alignment:
| Q |
103 |
ccacttcatggatattccattagtgaaaaatactnnnnnnnctacaaaataatctaactgaccatgatagaaattaaaccattggtgcaagtcaccaagt |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15102644 |
ccacttcatggatattccattaatgaaaaagactaaaaga-ctgcaaaagaatctaactgaccatgatagaaattaaaccattggtgcaagtcaccaagt |
15102742 |
T |
|
| Q |
203 |
ctttaaaacggctgaaag |
220 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15102743 |
ctttaaaacggctgaaag |
15102760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University