View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4493_low_4 (Length: 431)
Name: NF4493_low_4
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_4 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 32456029 - 32456399
Alignment:
| Q |
18 |
aaaaccccctcaacctccacactactcatattctctccaccgcttattatcacatcttttgacctatctttaatctccaaatacccatcctcatgcataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32456029 |
aaaaccccctcaacctccacactactcatattctctccgccacttattatcaaatcttttgacctatctttaatctccaaatacccatcctcatgcataa |
32456128 |
T |
|
| Q |
118 |
ccgcaacatcacccgtataaaaccaaccattctttttgatacactgcgatgtggcaatctcatcttttaaataacctaacatgacacatgcaccgtttac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
32456129 |
ccgcaacatcacccgtataaaaccaaccattctttttgatacactgcgatgtggcaatctcatctttaaaataacctaacataacacatgcaccttttac |
32456228 |
T |
|
| Q |
218 |
aacgatctcaccaacggttacaccatcatgcttcacactttctccagtggatcccactacatcaacctccgccaccccgaccctcctcacaccttgcctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||||||||||||||| ||| |||||||||||||||| |
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| T |
32456229 |
aacgatctcaccaacggttacaccatcattcttcacactttcaccagtgggtcccaccacatcaacctccgccacccccaccttcctcacaccttgcctc |
32456328 |
T |
|
| Q |
318 |
gccttcatcctcgccctctccgtcgccggaaacctatcccattctctcttccaagcacacgacactatcac |
388 |
Q |
| |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32456329 |
gccttcatcctcgccttctccgttgccggaaacctatcccattctctcttccaagcacacgacacaatcac |
32456399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 25 - 413
Target Start/End: Complemental strand, 32465099 - 32464711
Alignment:
| Q |
25 |
cctcaacctccacactactcatattctctccaccgcttattatcacatcttttgacctatctttaatctccaaatacccatcctcatgcataaccgcaac |
124 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||| || ||| |||||| |||| |
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| T |
32465099 |
cctcaacctccacactactcatattctctccaccacttattatcacatcttttgtcctatccttaatctccatatacccattcttatgtataaccccaac |
32465000 |
T |
|
| Q |
125 |
atcacccgtataaaaccaaccattctttttgatacactgcgatgtggcaatctcatcttttaaataacctaacatgacacatgcaccgtttacaacgatc |
224 |
Q |
| |
|
||||||||| ||||||||||||| |||| | ||||||||| | |||||| ||||||||||||||||| | ||| ||||| ||||| ||||||||||| |
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| T |
32464999 |
atcacccgtgtaaaaccaaccatcctttctcatacactgccacgtggcatattcatcttttaaataaccaagcataacacaagcaccttttacaacgatt |
32464900 |
T |
|
| Q |
225 |
tcaccaacggttacaccatcatgcttcacactttctccagtggatcccactacatcaacctccgccaccccgaccctcctcacaccttgccttgccttca |
324 |
Q |
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|||||||| ||||||||||||| ||| |||||||| ||||||| ||| || |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32464899 |
tcaccaaccgttacaccatcattctttacactttcaccagtgggtccgaccacatcaacctccgccacccccaccctcctcacaccttgccttgccttca |
32464800 |
T |
|
| Q |
325 |
tcctcgccctctccgtcgccggaaacctatcccattctctcttccaagcacacgacactatcactccacaagtctccgtcattccatat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32464799 |
tcctcgccctctccgtcgccggaaacctatcccattctctcttccaagcacacgacactatcactccacatgtctccgtcattccatat |
32464711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 32471773 - 32471898
Alignment:
| Q |
26 |
ctcaacctccacactactcatattctctccaccgcttattatcacatcttttgacctatctttaatctccaaatacccatcctcatgcataaccgcaaca |
125 |
Q |
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|
|||||||||||||||||||| |||||| ||||| || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| || | ||| |
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| T |
32471773 |
ctcaacctccacactactcaaattctcaccaccactaataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcatcacacctaca |
32471872 |
T |
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| Q |
126 |
tcacccgtataaaaccaaccattctt |
151 |
Q |
| |
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||||| || ||||||||||| ||||| |
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| T |
32471873 |
tcaccagtgtaaaaccaacccttctt |
32471898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 24536 - 24178
Alignment:
| Q |
18 |
aaaaccccctcaacctccacactactcatattctctccaccgcttattatcacatcttttgacctatctttaatctccaaatacccatcctcatgcataa |
117 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
24536 |
aaaacaccctcaacttccacactactcatattctccccaccacttattatcacatcttttaacctatccttaatctccaaatacccatcctcatgcataa |
24437 |
T |
|
| Q |
118 |
ccgcaacatcacccgtataaaaccaaccattctttttgatacactgcgatgtggcaatctcatcttttaaataacctaacatgacacatgcaccgtttac |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||| ||||||||||||| ||||||||||| ||||| ||||| ||||| |
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| T |
24436 |
ccgcaacatcacctgtataaaaccaaccattctttttcatacactgcaacgtggcattctcatcttttaagtaacctaacataacacaagcaccttttac |
24337 |
T |
|
| Q |
218 |
aacgatctcaccaacggttacaccatcatgcttcacactttctccagtggatcccactacatcaacctccgccaccccgaccctcctcacaccttgcctt |
317 |
Q |
| |
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||| ||||||||| | |||| |||||| ||||||||||||||||| |||| |||||| ||||||||||||| ||| || ||||| |||||||||||||| |
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| T |
24336 |
aactatctcaccagccgttataccatcgtgcttcacactttctccggtgggtcccaccacatcaacctccgtcacacccacccttctcacaccttgcctc |
24237 |
T |
|
| Q |
318 |
gccttcatcctcgccctctccgtcgccggaaacctatcccattctctcttccaagcaca |
376 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||| |
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| T |
24236 |
gccttcatcctcgccttccccgtcgccggaaacctatcccattcccttttccaagcaca |
24178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 29003813 - 29003894
Alignment:
| Q |
66 |
atcacatcttttgacctatctttaatctccaaatacccatcctcatgcataaccgcaacatcacccgtataaaaccaaccat |
147 |
Q |
| |
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||||||||||| |||||||||||||| |||||||| ||||| | ||| ||||| |||||||||| || ||||||||||| |
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| T |
29003813 |
atcacatctttagacctatctttaatttccaaataaccatctttatgtataacaccaacatcaccagttctaaaccaaccat |
29003894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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