View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4493_low_7 (Length: 392)
Name: NF4493_low_7
Description: NF4493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4493_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 41305456 - 41305235
Alignment:
| Q |
20 |
ccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41305456 |
ccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctc |
41305357 |
T |
|
| Q |
120 |
agcttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctcc |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41305356 |
agcttcaacccaatactttggatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctcc |
41305257 |
T |
|
| Q |
220 |
ctactttctcttgggagtaaca |
241 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41305256 |
ctactttctcttgggagtaaca |
41305235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 377
Target Start/End: Complemental strand, 41337923 - 41337568
Alignment:
| Q |
22 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcag |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41337923 |
ggacacatccttcttccagcaccaaatggtattaattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcaggtttaaaactctcag |
41337824 |
T |
|
| Q |
122 |
cttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctccct |
221 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||| |||||||| |||||| ||||||||||| || |||||| ||||||||| || ||||| || |
|
|
| T |
41337823 |
cttcaacccaatactttggatctcttccaattgcccaaacattgacagcaacccttgtcttagctgggatctcatacccattgatttcacatctctctct |
41337724 |
T |
|
| Q |
222 |
actttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatcc |
321 |
Q |
| |
|
|||||||||||| | ||||| ||| ||| |||||||||||| | |||||||||||||| ||| ||||||||| ||||| | |||||||||||| || |
|
|
| T |
41337723 |
actttctcttggaaccaacaaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtct |
41337624 |
T |
|
| Q |
322 |
acatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattac |
377 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
41337623 |
acatacccctttttatcaaacactcttcttacctcaacttgtgcttcttccattac |
41337568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 41317142 - 41316782
Alignment:
| Q |
22 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
41317142 |
ggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcag |
41317043 |
T |
|
| Q |
122 |
cttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctccct |
221 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| ||||||||||||||| |||||| ||||| |||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
41317042 |
cttcaacccaataccttggatctcttccaatagcccaagcattgacagcaacccttgtcttggctggaatctcataaccattgatttggcatctctccct |
41316943 |
T |
|
| Q |
222 |
actttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatcc |
321 |
Q |
| |
|
|||||||||||| | ||||||||| || ||||| | ||| | |||||||||||||| | | |||||||||| || || | |||||||||||||||| |
|
|
| T |
41316942 |
actttctcttggaactaacaatggagcaacaggatacaacctcaatgtttctttgatgacagactttaagtatatcaattggtacaactctgtctcatcc |
41316843 |
T |
|
| Q |
322 |
acatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttg |
382 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||| |||||||| |||||||| |||| |
|
|
| T |
41316842 |
acatatccctttttatcaaacactcttcttacttcagcttgtgcttgttccattacatttg |
41316782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 41325206 - 41324846
Alignment:
| Q |
22 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcag |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
41325206 |
ggacacatccttcttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcaggtttaaaactttcag |
41325107 |
T |
|
| Q |
122 |
cttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctccct |
221 |
Q |
| |
|
| |||||||||||| ||| |||||||||||| ||||||||||| || || ||||| ||||||||||| || |||||| ||||||||||||| |||||||| |
|
|
| T |
41325106 |
catcaacccaataccttggatctcttccaatagcccaagcattaaccatgacccttgtcttagctgggatttcatacccattgatttggcatctctccct |
41325007 |
T |
|
| Q |
222 |
actttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatcc |
321 |
Q |
| |
|
|||||||||||| |||||||| ||| | | ||||||||||| | |||||| ||||| | | |||||||||||| || || | |||||||||||||||| |
|
|
| T |
41325006 |
actttctcttggaagtaacaacggtacggttggatgtagcctcattgtttccttgatcacagattttaagtatatcaattggtgcaactctgtctcatcc |
41324907 |
T |
|
| Q |
322 |
acatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttg |
382 |
Q |
| |
|
||| ||||||| | ||||| ||||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
41324906 |
acaaaccccttcctatcaaaaactcttcttacctcagcttgtgcttcttccatcacctttg |
41324846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 41329183 - 41328823
Alignment:
| Q |
22 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcag |
121 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
41329183 |
ggacacatccttcttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattggactattaacaaacctctcaggtttaaaactctcag |
41329084 |
T |
|
| Q |
122 |
cttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctccct |
221 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||| || || ||||| ||||||||||| || |||||| ||||||||||||| |||||||| |
|
|
| T |
41329083 |
cttcaacccaataccttgaatctcttccaatagcccaagcattaaccattacccttgtcttagctgggatttcatacccattgatttggcatctctccct |
41328984 |
T |
|
| Q |
222 |
actttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatcc |
321 |
Q |
| |
|
|||||||||||| | |||||||||| || ||||| | ||| | |||||||||||||| | |||||||||| || || | |||||||||||||||| |
|
|
| T |
41328983 |
actttctcttggaactaacaatggtgcaacgggatgcaacctcaatgtttctttgatgacggactttaagtatatcaattggtgcaactctgtctcatcc |
41328884 |
T |
|
| Q |
322 |
acatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttg |
382 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
41328883 |
acatactcctttttatcaaacactctacttacttcatcttgtgcttcttccattacctttg |
41328823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 41333116 - 41332756
Alignment:
| Q |
22 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
41333116 |
ggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcctttgaattcaattgtgctattaacaaacctctcaggtttaaaactctcag |
41333017 |
T |
|
| Q |
122 |
cttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctccct |
221 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||| || || ||||| ||||||||||| || |||||| |||| |||||||| || | | |
|
|
| T |
41333016 |
cttcaacccaataccttgaatctcttccaatagcccaagcattaaccattacccttgtcttagctgggatttcatacccattaatttggcatggcttcat |
41332917 |
T |
|
| Q |
222 |
actttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatcc |
321 |
Q |
| |
|
|||||||||||| | |||||||||| || ||||||| ||| | ||||||||||| || | | |||||||||| || || | |||||||| ||||||| |
|
|
| T |
41332916 |
actttctcttggaattaacaatggtgcaacgggatgtaacctcaatgtttctttgacgacagactttaagtatatcaattggtgcaactctgactcatcc |
41332817 |
T |
|
| Q |
322 |
acatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttg |
382 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| | |||||||| |||| |||||||| |
|
|
| T |
41332816 |
acatacccctttttatcaaacactcttcttacttcaatctgtgcttcttccaatacctttg |
41332756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 41311347 - 41310983
Alignment:
| Q |
22 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
41311347 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtccgtgcctttgaattcaattgtgctattaacaaacctctcaggtttaaatctctcag |
41311248 |
T |
|
| Q |
122 |
cttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctccct |
221 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| ||||||||| | | || || || |||||| ||| || |||| | ||| |||||||| |||||||| |
|
|
| T |
41311247 |
cttcaacccaataccttggatctcttccaatagcccaagcaataataacgactcttgtcttaattgggatctcatgcctattaatttggcatctctccct |
41311148 |
T |
|
| Q |
222 |
actttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatcc |
321 |
Q |
| |
|
|||||||||||| | |||||||||| || ||||| | ||| |||||||||||||||| | | |||||||||| ||| | | |||||| |||||||| |
|
|
| T |
41311147 |
actttctcttggaactaacaatggtgcaactggatgcaacctcagtgtttctttgatgacaaactttaagtatatcaacaggtgcaactccatctcatcc |
41311048 |
T |
|
| Q |
322 |
ac----atacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttg |
382 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
41311047 |
acatatatacccctttttatcaaacactcttcttacttcaacttgtgcttcttccattacctttg |
41310983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 25 - 367
Target Start/End: Complemental strand, 41287305 - 41286963
Alignment:
| Q |
25 |
cacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcagctt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
41287305 |
cacatcctccttccagcaccaaatggtatgtattcgaagtctgtgccattgaaatcaattggactattaacaaacctctcgggtttgaaattctcagctt |
41287206 |
T |
|
| Q |
125 |
caacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctccctact |
224 |
Q |
| |
|
| |||||||| ||| |||||||||||| |||||||||||||||| |||||||||||| || || |||||||| |||| |||||||| || | |||| |
|
|
| T |
41287205 |
cgacccaatatcttggatctcttccaattgcccaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcatact |
41287106 |
T |
|
| Q |
225 |
ttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatccaca |
324 |
Q |
| |
|
||||||||| | ||||||||| || |||||| | ||| | |||||||||||| | | | || ||||||| || || | ||||||||||||| ||||| |
|
|
| T |
41287105 |
ttctcttggaatcaacaatggtatagcaggatgcaacctcattgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcaaccaca |
41287006 |
T |
|
| Q |
325 |
tacccctttttgtcaaacactcttcttacctcactttgtgctt |
367 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
41287005 |
tacccctttctatcaaacactcttcttacctcagcttgtgctt |
41286963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 23 - 378
Target Start/End: Complemental strand, 41367294 - 41366939
Alignment:
| Q |
23 |
gacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcagc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| || |||||||||| || |
|
|
| T |
41367294 |
gacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattcggctattaagaaatctctcaggcttaaaactcttggc |
41367195 |
T |
|
| Q |
123 |
ttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctcccta |
222 |
Q |
| |
|
|||||||||||| | | |||||||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| ||| |||||||| || | || |
|
|
| T |
41367194 |
atcaacccaatacctcggatctcttccaatagcccaagcattaacaatgacccttgtcttagctgggatatcatatctatttatttggcatggcttcgta |
41367095 |
T |
|
| Q |
223 |
ctttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatcca |
322 |
Q |
| |
|
||||||||||| | || |||||| || |||||| | ||| | |||||||||||||| |||||||||||| || || | |||||||||||||| || |
|
|
| T |
41367094 |
ctttctcttggaatcaataatggtatagaaggatgcaacctcattgtttctttgatgacggattttaagtatatcaattggtgcaactctgtctcattca |
41366995 |
T |
|
| Q |
323 |
catacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacc |
378 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
41366994 |
catatccctttttatcaaacactcttcttacctcaacttgtgctgcttccattacc |
41366939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 22 - 382
Target Start/End: Original strand, 31177694 - 31178054
Alignment:
| Q |
22 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcag |
121 |
Q |
| |
|
|||||||| || ||||||||||| || |||||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31177694 |
ggacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatcaattgtgctattaacaaacctctcgggtttaaaactctcag |
31177793 |
T |
|
| Q |
122 |
cttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctccct |
221 |
Q |
| |
|
|||| |||||||| || |||||||||||| |||||| |||||| | ||| || || |||||||| || |||||| ||||||||||||| ||||| || |
|
|
| T |
31177794 |
cttctgcccaatacctttcatctcttccaattgcccaaacattgatagcaactcttgttttagctgggatttcatacccattgatttggcatctctctct |
31177893 |
T |
|
| Q |
222 |
actttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatcc |
321 |
Q |
| |
|
|||||||||||| | ||||| ||| || |||||| | ||||| |||||||||||| ||| | |||||||||| || || | ||||||||| ||||| |
|
|
| T |
31177894 |
actttctcttggaatcaacaaaggtaaagaaggatgcaaccttaatgtttctttgattatagactttaagtatatcaaatggtgcaactctgtttcatcg |
31177993 |
T |
|
| Q |
322 |
acatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttg |
382 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||||| ||| ||||||||| | ||||| ||||| |
|
|
| T |
31177994 |
acatgcccctttttatcaaacacttttcttacttcagcttgtgcttccttcattatctttg |
31178054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 382
Target Start/End: Original strand, 31187757 - 31188117
Alignment:
| Q |
22 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcag |
121 |
Q |
| |
|
|||||||| || ||||||||||| || |||||||||||||| | |||||||||||||||||||| |||||| | ||||||||| |||||||||||||||| |
|
|
| T |
31187757 |
ggacacattcttcttccagcaccgaacggtatgtattcaaaatttgtgcctttgaaatcaattgtgctattgagaaacctctcaggtttaaaactctcag |
31187856 |
T |
|
| Q |
122 |
cttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctccct |
221 |
Q |
| |
|
|||| |||||||| || |||||||||||| |||||| |||||| | ||| || || |||||||| || |||||| ||||||||||||| ||||| || |
|
|
| T |
31187857 |
cttctgcccaatacctttcatctcttccaattgcccaaacattgatagcaactcttgttttagctgggatttcatacccattgatttggcatctctctct |
31187956 |
T |
|
| Q |
222 |
actttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatcc |
321 |
Q |
| |
|
|||||||||||| | ||||| || ||| |||||||||||| | ||||||| |||| ||| | |||||||||| || || | ||||||||| ||||| |
|
|
| T |
31187957 |
actttctcttggaaccaacaaaggcacagaaggatgtagcctcaatgtttctctgattatagactttaagtatatcaattggtgcaactctgtttcatcg |
31188056 |
T |
|
| Q |
322 |
acatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttg |
382 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||| |||||||| ||||||| ||||| |
|
|
| T |
31188057 |
acatacccctttttatcaaacacttttcttacttcagcttgtgctttctccattatctttg |
31188117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 31226021 - 31225661
Alignment:
| Q |
22 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcag |
121 |
Q |
| |
|
|||||||| || ||||||||||| || |||||||||||||| | |||||||||||||||||||| |||||| | ||||||||| |||||||||||||||| |
|
|
| T |
31226021 |
ggacacattcttcttccagcaccgaacggtatgtattcaaaatttgtgcctttgaaatcaattgtgctattgagaaacctctcaggtttaaaactctcag |
31225922 |
T |
|
| Q |
122 |
cttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctccct |
221 |
Q |
| |
|
|||| |||||||| || |||||||||||| |||||| |||||| | ||| || || |||||||| || |||||| ||||||||||||| ||||| || |
|
|
| T |
31225921 |
cttctgcccaatacctttcatctcttccaattgcccaaacattgatagcaactcttgttttagctgggatttcatacccattgatttggcatctctctct |
31225822 |
T |
|
| Q |
222 |
actttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatcc |
321 |
Q |
| |
|
|||||||||||| | ||||| ||| ||| ||||||| || | ||||||| | || ||| | |||||||||| ||| || | ||||||||| ||||| |
|
|
| T |
31225821 |
actttctcttggaaccaacaaaggtgcagatggatgtaatctcaatgtttctctaattatagactttaagtatattaattggtgcaactctgtttcatcg |
31225722 |
T |
|
| Q |
322 |
acatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttg |
382 |
Q |
| |
|
|||| |||||||| ||||||| ||||||| ||| ||||||||| ||||||| ||||| |
|
|
| T |
31225721 |
acatgtccctttttatcaaacatgtttcttacttcagcttgtgcttcctccattatctttg |
31225661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 41432114 - 41432005
Alignment:
| Q |
265 |
agtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatccacatacccctttttgtcaaacactcttcttacctcactttgtg |
364 |
Q |
| |
|
|||||||||||||||||| | || ||||||| || | | |||||| ||||||||||||||||| || | ||||||||||||||||||||| ||||| |
|
|
| T |
41432114 |
agtgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaacactcttcttacctcagcttgtg |
41432015 |
T |
|
| Q |
365 |
cttcatccat |
374 |
Q |
| |
|
|||| ||||| |
|
|
| T |
41432014 |
cttcttccat |
41432005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 41369980 - 41369921
Alignment:
| Q |
22 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatca |
81 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
41369980 |
ggacacatcctcctccctgcatcaaatggtatgtattcaaagtctatacctttgaaatca |
41369921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 7141777 - 7141633
Alignment:
| Q |
20 |
ccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctc |
119 |
Q |
| |
|
|||||||||| ||||||||||| || || || ||||| || |||| | |||||||||||||| | |||| | |||||||||| || |||| ||||| |
|
|
| T |
7141777 |
ccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctc |
7141678 |
T |
|
| Q |
120 |
agcttcaacccaatactttgaatctcttccaatcgcccaagcatt |
164 |
Q |
| |
|
||| ||| |||||| || | ||||||||| || ||||| ||||| |
|
|
| T |
7141677 |
agcatcattccaatatttaggatctcttcctattgcccacgcatt |
7141633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 20 - 382
Target Start/End: Original strand, 17248572 - 17248934
Alignment:
| Q |
20 |
ccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctc |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| || | |||||||||||||||||| |||||||| |||||| || ||||| |||||||| |
|
|
| T |
17248572 |
ccggacaaatcctccttccagcaccaaatggtatgtattcgaaattcatgcctttgaaatcaattgggctattaaaaaacctttcaggtttgaaactctc |
17248671 |
T |
|
| Q |
120 |
agcttcaacccaatactttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctcc |
219 |
Q |
| |
|
|||||||||||||||| || |||||||||||| |||||| |||| ||| |||||| ||||||||||||||||||||| | |||||| | || | ||| |
|
|
| T |
17248672 |
agcttcaacccaatacctttgatctcttccaattgcccaaacattaacagcaacccttgtcttagctggaatatcatacccgttgattcgacatttttcc |
17248771 |
T |
|
| Q |
220 |
ctactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcat |
319 |
Q |
| |
|
||||||| ||| || | ||||||||| || |||||| ||||| |||||||||||||||| | | |||||||||| ||| |||| |||||| || |||| |
|
|
| T |
17248772 |
ctactttgtctaggaatcaacaatggtacaataggatgcagcctcagtgtttctttgatgacagaatttaagtatattaattgatccaactccgtttcat |
17248871 |
T |
|
| Q |
320 |
ccacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttg |
382 |
Q |
| |
|
| |||||||||||| | ||||| || |||||||||||| ||||||| | ||||| ||||||| |
|
|
| T |
17248872 |
ctacatacccctttctatcaaaaacacttcttacctcagcttgtgctgcttccatcacctttg |
17248934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 22986265 - 22986347
Alignment:
| Q |
22 |
ggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctc |
104 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| ||||| | || |||||||||||||| || |||| || ||||||||| |
|
|
| T |
22986265 |
ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctc |
22986347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 22946390 - 22946452
Alignment:
| Q |
20 |
ccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaa |
82 |
Q |
| |
|
||||||| || |||||||| ||||||||||| ||||| ||||| | ||| ||||||||||||| |
|
|
| T |
22946390 |
ccggacaaattctccttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaa |
22946452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 23024374 - 23024435
Alignment:
| Q |
136 |
tttgaatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcata |
197 |
Q |
| |
|
|||| ||||||| |||| |||||||||||||| || ||| ||||||||| |||||| ||||| |
|
|
| T |
23024374 |
tttggatctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcata |
23024435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 22971951 - 22971999
Alignment:
| Q |
34 |
cttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaa |
82 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | ||| ||||||||||||| |
|
|
| T |
22971951 |
cttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaa |
22971999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 15885867 - 15885829
Alignment:
| Q |
129 |
ccaatactttgaatctcttccaatcgcccaagcattgac |
167 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
15885867 |
ccaatactttggatctcttccaatcgcccatgcattgac |
15885829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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