View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4494-Insertion-1 (Length: 1058)
Name: NF4494-Insertion-1
Description: NF4494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4494-Insertion-1 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] scaffold0536 (3 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 713; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 212 - 1058
Target Start/End: Complemental strand, 3417471 - 3416618
Alignment:
| Q |
212 |
caagaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3417471 |
caagaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatat |
3417372 |
T |
|
| Q |
312 |
gtacaacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggtt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3417371 |
gtacaacactgagttaacttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgtttcccccacctgatttctctagagtggtt |
3417272 |
T |
|
| Q |
412 |
ctccaaatagaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3417271 |
ctccaaatagaagatggaccaagatgccaagccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga |
3417172 |
T |
|
| Q |
512 |
cgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaa |
611 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3417171 |
cgataaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaa |
3417072 |
T |
|
| Q |
612 |
gtttggaacgacataggaacttg------aatcagaatccgtaaaaagtaaattatttgttctaagcgattccatgagcaagactggaaagacagacaaa |
705 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
3417071 |
gtttggaacgatataggaacttgaatccgaatcagaatccgtaaaaagtaaattatttgttctaagggattccatgagcaagactggaaaaacggacaaa |
3416972 |
T |
|
| Q |
706 |
acattgtatgtgaaattagggatttgaaggctctgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaa |
805 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3416971 |
acattgtatgtgaaattagggatttgaagcttctgggccaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaa |
3416872 |
T |
|
| Q |
806 |
tgaaatcctcaatgggtcgatggaggagcattgcgccattgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgccttcagg |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3416871 |
tgaaatcctcaatgggtcgatggaggagcattgcgccattgttgatcttccaagtggtgacgaggtcggtggtggaggatatagattcaatgccttcagg |
3416772 |
T |
|
| Q |
906 |
gaggtccatttgttgaaaggggaagtcgacggtgtgaaggctgaggaagaagggagcggcataagaatagagatttttgtaag-gatttggaattggagg |
1004 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||| |
|
|
| T |
3416771 |
gaggtccatttgttgaaagggaaagtcgacggtgtgaaggcggaggaagaagggagcggcataagaa-agaga-ttttgtaagaaatttggcattggagg |
3416674 |
T |
|
| Q |
1005 |
gagtggtgatgattgtgacatgttggcca-cggatgc-aacatagctgctatatca |
1058 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
3416673 |
gagtggtgatgattgtgacatgttggccatgggatgcaaacatagctgctatatca |
3416618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 3417675 - 3417516
Alignment:
| Q |
8 |
gaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggccca |
107 |
Q |
| |
|
||||||| |||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3417675 |
gaactcctgcaccaacagcctcaacaaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggccca |
3417576 |
T |
|
| Q |
108 |
acccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3417575 |
acccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggcaacca |
3417516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 215 - 952
Target Start/End: Original strand, 12540923 - 12541675
Alignment:
| Q |
215 |
gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta |
314 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| ||| ||||||||||||||||||||||| ||| |||||| || | |||||||||||||||||| |
|
|
| T |
12540923 |
gaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgta |
12541022 |
T |
|
| Q |
315 |
caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc |
414 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| || ||| |||| ||||| ||| |||||||||| ||||||| |||||||||||| || || || || |
|
|
| T |
12541023 |
caccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccctccctgctttctcttgaatgtttttc |
12541122 |
T |
|
| Q |
415 |
caaatagaaga---tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga |
511 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||| | ||||||||| |||||||| | ||||||||||||||||||||||| |||||||||| |
|
|
| T |
12541123 |
tgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttga |
12541222 |
T |
|
| Q |
512 |
cgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaa |
611 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||| |
|
|
| T |
12541223 |
taatgtagcctgtacttttgaacactgtgtcaagcatcaatcctatgaatttgctgagaacctttgacggtttactgcacatggtgatacgatgaggaaa |
12541322 |
T |
|
| Q |
612 |
gtttggaacgacataggaactt------------gaatcagaatccgtaaaaagtaaattatttgttctaagcgattccatgagcaagactggaaagaca |
699 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||| ||| ||||| ||| ||||||| ||||||||||| |||| | ||| | | |
|
|
| T |
12541323 |
atttggaacgacatacgaacttgaatccgaatcagaatcagaattggtatgaagcaaattgttttttctaagggattccatgagggagacagcaaaaaga |
12541422 |
T |
|
| Q |
700 |
gacaaaacattgtatgtgaaattagggatttgaaggctctgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgt |
799 |
Q |
| |
|
|| | ||||| |||||||||| || | ||| || | | || ||||||||| |||||| ||| | |||||||| ||||||||||| ||||||| | |
|
|
| T |
12541423 |
gaggatccattgaatgtgaaattgggtacttgtagcttacgagccaagtcattaccccatgagtaagaagagtcggcaatgatacaatcaggtggattat |
12541522 |
T |
|
| Q |
800 |
ttttaatgaaatcctcaatgggtcgatggaggagcattgcgccattgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgcc |
899 |
Q |
| |
|
| || ||||| |||||||||| ||||||||||||||| ||||||| || ||||||| ||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
12541523 |
tcacaacaaaatcatcaatgggtccatggaggagcattgcaccattgtgaattttccaagaggtaatggggtcagtggtggaggacatagattcaatgcc |
12541622 |
T |
|
| Q |
900 |
ttcagggaggtccatttgttgaaaggggaagtcgacggtgtgaaggctgagga |
952 |
Q |
| |
|
|| ||||||||| | ||||| ||||||||||||| ||||||||| |||||| |
|
|
| T |
12541623 |
tttagggaggtcgacttgttcggaggggaagtcgacagtgtgaagggtgagga |
12541675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 215 - 1058
Target Start/End: Original strand, 28385572 - 28386425
Alignment:
| Q |
215 |
gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta |
314 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
28385572 |
gaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgta |
28385671 |
T |
|
| Q |
315 |
caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc |
414 |
Q |
| |
|
|| |||||||||||| | ||||| |||||||| |||||||||| ||||| ||| || ||| || ||||||| ||||||||||| || ||| | |
|
|
| T |
28385672 |
cacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactcttgtttcccttctctgctttctcttgaacagtttta |
28385771 |
T |
|
| Q |
415 |
caaata---gaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga |
511 |
Q |
| |
|
| |||| |||| ||||||||||||||||||||||||||| | ||||||||| ||||||| | ||||||||||||||||||||||| |||||||||| |
|
|
| T |
28385772 |
cgaataaaggaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctccatcaagttcaacaaagttgttga |
28385871 |
T |
|
| Q |
512 |
cgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtga---taggaagagg |
608 |
Q |
| |
|
|||| |||| ||||||||| ||| ||||||||||||| ||||||||| | ||||||||||||||||||||||| |||| ||| | || | || | |
|
|
| T |
28385872 |
tgatgtagcctgtacttttgagcaccgtgtcaagcatcattcctatgaacatgctgagaacctttggtggtttactacacaaggtaatattatcatgatg |
28385971 |
T |
|
| Q |
609 |
aaagtttggaacgacataggaacttga------------atcagaatccgtaaaaagtaaattatttgttctaagcgattccatgagcaagactggaaag |
696 |
Q |
| |
|
|| |||||||||||||| |||||||| ||||| ||| ||| ||||||||| ||||||| ||| || | | || | |||| | |||| |
|
|
| T |
28385972 |
aagatttggaacgacatatgaacttgaatctgaatcagcatcagcatctgtatgaagtaaattgtttgttcgaagagaatgaaagatcgagacagcaaag |
28386071 |
T |
|
| Q |
697 |
acagacaaaacattgtatgtgaaattagggatttgaaggctctgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggat |
796 |
Q |
| |
|
| |||| | |||| | || | ||| ||||||||||| | ||||| ||||||||| |||||| | |||| ||||| | || |||||||| ||||||| |
|
|
| T |
28386072 |
agagacgatccattaaacgttagattcgggatttgaagcttgtgggccaagtcattagcccatgagaatgcggagtcagcaataatacaatccggtggat |
28386171 |
T |
|
| Q |
797 |
cgtttttaatgaaatcctcaatgggtcgatggaggagcattgcgccattgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaat |
896 |
Q |
| |
|
|| | || ||||||| ||| | | || |||||||||||||||||| | ||||||||||||||||| | ||||||||||||||| ||||| |||| |
|
|
| T |
28386172 |
tcttctcaacgaaatccccaaccgcttcattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaac |
28386271 |
T |
|
| Q |
897 |
gccttcagggaggtccatttgttgaaaggggaagtcgacggtgtgaaggctgaggaagaagggagcggcataagaatagagatttttgtaa-ggatttgg |
995 |
Q |
| |
|
||||| ||||||||| | ||||||| ||||||| || ||||||||||||| |||| |||||| | | | |||| |||| |||| ||||| || |
|
|
| T |
28386272 |
gcctttagggaggtcgacttgttgataggggaattcaacggtgtgaaggcggagg---------gcggcagatg-agagag-ttttagtaagggattggg |
28386360 |
T |
|
| Q |
996 |
aattggagggagtggtgatgattgtgacatgttggccacg-gatgc-aacatagctgctatatca |
1058 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||| || |||||||||| |
|
|
| T |
28386361 |
cattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatca |
28386425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 12540716 - 12540868
Alignment:
| Q |
8 |
gaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggccca |
107 |
Q |
| |
|
|||||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
12540716 |
gaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggccca |
12540815 |
T |
|
| Q |
108 |
acccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg |
160 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12540816 |
acccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcg |
12540868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 28385365 - 28385515
Alignment:
| Q |
8 |
gaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggccca |
107 |
Q |
| |
|
|||||||||| | |||||||||||| | ||||||||| || |||||||||| ||||||||| |||||||| | |||||||||| |||| ||||||||||| |
|
|
| T |
28385365 |
gaactcccgcgccaacagcctctacaattgagttccctccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggccca |
28385464 |
T |
|
| Q |
108 |
acccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt |
158 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28385465 |
acccctgattatgaaacccttctttccaatgtttctctcctcaaatccctt |
28385515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 997 - 1033
Target Start/End: Original strand, 12541707 - 12541743
Alignment:
| Q |
997 |
attggagggagtggtgatgattgtgacatgttggcca |
1033 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12541707 |
attggagggagtggtgatgattgtgacttgttggcca |
12541743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 215 - 1036
Target Start/End: Original strand, 13440438 - 13441273
Alignment:
| Q |
215 |
gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta |
314 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
13440438 |
gaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgta |
13440537 |
T |
|
| Q |
315 |
caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc |
414 |
Q |
| |
|
|||||| |||||||||| | ||||| ||||||||||| ||| || ||| || || ||||||| ||||||| ||||||||||| || ||||| | |
|
|
| T |
13440538 |
caacaccgagttaactttctctgagtcgagccaactcatgcattcgtgcatgttcacatcaccctcctttcccctctctgctttctcttgaatggtttta |
13440637 |
T |
|
| Q |
415 |
caaat---agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga |
511 |
Q |
| |
|
| ||| ||||| |||||| ||||||||| |||||||||| | |||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| |
|
|
| T |
13440638 |
cgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcactcttctccgtcaagttcagtgaagttgttga |
13440737 |
T |
|
| Q |
512 |
cgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaa |
611 |
Q |
| |
|
||||| | |||||||||| |||||| ||||||||| | || |||||| || | |||||||| ||||| | ||||| ||| ||| || ||||||| |
|
|
| T |
13440738 |
tgatgagtgctttacttttgagcactgtcccaagcatcatttttaggaatttgctaattacctttggcggttttccgcacaaggttatacgatgaggaaa |
13440837 |
T |
|
| Q |
612 |
gtttggaacgacataggaacttg------aatcagaatccgta----aa--aagtaaattatttgttctaagcgattccatgagcaagactggaaagaca |
699 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||| ||| || |||||| || |||| | || ||||||| ||| |||| | ||| | |
|
|
| T |
13440838 |
atttggaacaacaaaggaacttgaatccaaatcagaattagtatcagaatgaagtaagttgtttgcttggagggattccacgagagagacggtaaaaagt |
13440937 |
T |
|
| Q |
700 |
gacaaaacattgtatgtgaaattagggatttgaaggctctgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgt |
799 |
Q |
| |
|
||||| ||||| |||||| || ||||| ||||| | || || ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
13440938 |
gacaatccattgaatgtgaggtttgggatctgaagcttatgcgccaagtcattagcccatgggtatgcggagtcggagatgatacaatctggtggatctt |
13441037 |
T |
|
| Q |
800 |
ttttaatgaaatcctcaatgggtcgatggaggagcattgcgccattgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgcc |
899 |
Q |
| |
|
| | |||||||||||||||| || ||||||||||||||||||| || ||||||||||| ||| | | |||||||||||| || |||||||||||||| |
|
|
| T |
13441038 |
tctccatgaaatcctcaatggatccatggaggagcattgcgccacggtggatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgcc |
13441137 |
T |
|
| Q |
900 |
ttcagggaggtccatttgttgaaaggggaagtcgacggtgtgaaggctgaggaagaagggagcggcataagaatagagatttttgtaaggatttggaatt |
999 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||||||||||| | || ||||||||||| ||| || | | | |||||||| || ||||| | || |
|
|
| T |
13441138 |
ttcagggaggtcgacttgttgggagggaaagtcgacggtgtggaagcggaggaagaaggaagccgcggatg-agagagatttggttagggattgagcgtt |
13441236 |
T |
|
| Q |
1000 |
ggagggagtggtgatgattgtgacatgttggccacgg |
1036 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13441237 |
ggagggagtggtgatgattgtgacttgttggccacgg |
13441273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 215 - 944
Target Start/End: Original strand, 13448601 - 13449345
Alignment:
| Q |
215 |
gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta |
314 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
13448601 |
gaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgta |
13448700 |
T |
|
| Q |
315 |
caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc |
414 |
Q |
| |
|
|||||||||||||||| | ||| | |||||||||||||| ||| ||| || || |||||||||| ||||||| ||| ||||||| ||| ||| | |
|
|
| T |
13448701 |
caacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctgatttctcttgagcagttttg |
13448800 |
T |
|
| Q |
415 |
caaata---gaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga |
511 |
Q |
| |
|
| |||| |||| |||||||||||||||| |||||||||| | || |||||| |||||||| || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
13448801 |
cgaataagagaagttggaccaagatgccaaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatcaagttcactgaagttgttga |
13448900 |
T |
|
| Q |
512 |
cgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaa |
611 |
Q |
| |
|
||| | | |||||||| | ||| || |||||||||| ||| |||||| ||| || |||||||| ||||| | |||| ||||||| | ||||||| |
|
|
| T |
13448901 |
tgattagtgctttacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggcggttttccacacaaggtgatatggtgaggaaa |
13449000 |
T |
|
| Q |
612 |
gtttggaacgacataggaacttgaatc------agaatccgt---aaa---aagtaaattatttgttctaagcgattccatgagcaagactggaaagaca |
699 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||| || | | ||||||||| |||||| | || | ||||| ||| |||| | ||| | |
|
|
| T |
13449001 |
atttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacttaagtaaattgtttgttttgagggtttccacgagggagacagcaaaaagg |
13449100 |
T |
|
| Q |
700 |
gacaaaacattgtatgtgaaattagggatttgaaggctctgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgt |
799 |
Q |
| |
|
|||| ||||| |||||| || ||||| |||| | | ||| |||||||||||||||||||| | |||||||||||||||||||| |||||||| | |
|
|
| T |
13449101 |
cacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcat |
13449200 |
T |
|
| Q |
800 |
ttttaatgaaatcctcaatgggtcgatggaggagcattgcgccattgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgcc |
899 |
Q |
| |
|
| | |||||||||| |||| ||| | |||||||| |||||| | | |||||||||||||||| |||| || || || || ||||||||||| || |
|
|
| T |
13449201 |
tctcaatgaaatccccaataggttctttaaggagcatcgcgccagtatggatcttccaagtggtggtggggtccgtagttgaagacatagattcaatacc |
13449300 |
T |
|
| Q |
900 |
ttcagggaggtccatttgttgaaaggggaagtcgacggtgtgaag |
944 |
Q |
| |
|
|||||||||| | | |||||| |||||||||| ||||||||||| |
|
|
| T |
13449301 |
ttcagggaggccgacttgttgggaggggaagtcaacggtgtgaag |
13449345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 13448394 - 13448546
Alignment:
| Q |
8 |
gaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggccca |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| || ||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
13448394 |
gaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggccca |
13448493 |
T |
|
| Q |
108 |
acccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg |
160 |
Q |
| |
|
|||||||| ||||||||||||||| || || |||||||| ||||||||||||| |
|
|
| T |
13448494 |
acccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcg |
13448546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 215 - 511
Target Start/End: Original strand, 13455072 - 13455371
Alignment:
| Q |
215 |
gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta |
314 |
Q |
| |
|
|||||||||||||||| || ||||| | |||||||| || |||||| ||||||||||||||||||| ||| |||| || | |||||||||||||||||| |
|
|
| T |
13455072 |
gaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgta |
13455171 |
T |
|
| Q |
315 |
caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc |
414 |
Q |
| |
|
||| |||||||||||| | ||||| ||||| ||||||||||| || || || || | |||||||||||| ||| ||| ||| || |||||| |
|
|
| T |
13455172 |
caatactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattcacaaaaacctcgtttcccctctctgatttttcttgaacggttctg |
13455271 |
T |
|
| Q |
415 |
caaat---agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga |
511 |
Q |
| |
|
||||| ||||| |||||||| ||||||| |||||||||||| ||||| || |||||||| || |||||||||||||||| |||| |||||||||||| |
|
|
| T |
13455272 |
caaataagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaattcactgaagttgttga |
13455371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 13440231 - 13440390
Alignment:
| Q |
8 |
gaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggccca |
107 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
13440231 |
gaactcccgcactaacagactctacaattgagttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggccca |
13440330 |
T |
|
| Q |
108 |
acccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca |
167 |
Q |
| |
|
|||| ||| |||||||||| || | | |||||||||||| || |||||||| | |||||| |
|
|
| T |
13440331 |
acccttaatgatcaaacccatcctcctaatgtttctctcttcgaatccctttggcaacca |
13440390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 13454876 - 13455024
Alignment:
| Q |
19 |
ctaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggcccaacccctaacga |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| |||||||||||||| || ||||| || |||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
13454876 |
ctaacagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatga |
13454975 |
T |
|
| Q |
119 |
tcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca |
167 |
Q |
| |
|
|||||||||| || | |||||| |||| ||||||||||||| |||||| |
|
|
| T |
13454976 |
tcaaaccctttttctcgatgtttttctcttcaaatcccttcggcaacca |
13455024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 805 - 1036
Target Start/End: Original strand, 13462227 - 13462457
Alignment:
| Q |
805 |
atgaaatcctcaatgggtcgatggaggagcattgcgccattgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgccttcag |
904 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||| ||| |||||||| || |||||||||||||| |||| |
|
|
| T |
13462227 |
atgaaatcctcaatgggtccatggaggagcattgcgccatgatggatcttccaagatgtggtggagtcggtggtggaagacatagattcaatgccatcag |
13462326 |
T |
|
| Q |
905 |
ggaggtccatttgttgaaaggggaagtcgacggtgtgaaggctgaggaagaagggagcggcataagaatagagatttttgtaaggatttgga-attggag |
1003 |
Q |
| |
|
| ||| | | |||||| ||||||| |||| |||||||| || |||| | |||||||||| | | | ||||| ||| |||||| ||||| |||||| |
|
|
| T |
13462327 |
gaaggccaacttgttgggaggggaattcgatggtgtgaaagcgaaggagggagggagcggcggatg-agagaga-tttggtaagggattggacgttggag |
13462424 |
T |
|
| Q |
1004 |
ggagtggtgatgattgtgacatgttggccacgg |
1036 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| |
|
|
| T |
13462425 |
ggagtggtgatgactgtgacgtgttggccacgg |
13462457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 739 - 797
Target Start/End: Original strand, 13455611 - 13455669
Alignment:
| Q |
739 |
tgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatc |
797 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
13455611 |
tgggccaagtcattaacccatgggtatgcagcgtcggagatgatacaatctgggggatc |
13455669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 5e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 219 - 532
Target Start/End: Complemental strand, 12590103 - 12589787
Alignment:
| Q |
219 |
aacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaac |
318 |
Q |
| |
|
|||||||| |||| ||| || ||||||||||| | || | ||||||||| ||||||||||| ||||||||| | ||| ||||| |||||||||||| |
|
|
| T |
12590103 |
aacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaac |
12590004 |
T |
|
| Q |
319 |
actgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaa |
418 |
Q |
| |
|
|| |||||| || | | ||||| ||||||||||| ||||| ||| | || || ||| ||| ||||||| | ||||||||||| || ||| | || |
|
|
| T |
12590003 |
acagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaa |
12589904 |
T |
|
| Q |
419 |
ta---gaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgat |
515 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||| ||||||||| || || |
|
|
| T |
12589903 |
taagagaagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaat |
12589804 |
T |
|
| Q |
516 |
gaagccattacttttga |
532 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
12589803 |
gagtccattacttttga |
12589787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 215 - 388
Target Start/End: Complemental strand, 12483402 - 12483229
Alignment:
| Q |
215 |
gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta |
314 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| |||||| ||| || || || |||||||||||||||| | | ||| ||||| |||||||| |
|
|
| T |
12483402 |
gaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgta |
12483303 |
T |
|
| Q |
315 |
caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccc |
388 |
Q |
| |
|
||||||||| || |||| | |||||| |||||||| | ||||||||| | ||| || ||| ||||||||||| |
|
|
| T |
12483302 |
caacactgaattttcttgctttgagtttagccaactttgacactcatgcacgctcacaacactctcgtttcccc |
12483229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 12590231 - 12590197
Alignment:
| Q |
97 |
tgtggggcccaacccctaacgatcaaacccttctt |
131 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12590231 |
tgtggggcccaacccctaatgatcaaacccttctt |
12590197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 998 - 1035
Target Start/End: Complemental strand, 12482605 - 12482568
Alignment:
| Q |
998 |
ttggagggagtggtgatgattgtgacatgttggccacg |
1035 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
12482605 |
ttggaaggagtggtgatgattgtgacatgatggccacg |
12482568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 5e-28; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 215 - 550
Target Start/End: Original strand, 48958385 - 48958723
Alignment:
| Q |
215 |
gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta |
314 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||||||| | || ||||||||||| |||||||||||||| ||||| | ||||||||| |||||||| |
|
|
| T |
48958385 |
gaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgta |
48958484 |
T |
|
| Q |
315 |
caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc |
414 |
Q |
| |
|
||||||||||||| | | |||||||||||||||| || ||||| |||| || || ||| ||||||| ||| ||||||| || ||||| |
|
|
| T |
48958485 |
caacactgagttatgtctcttcaagttgagccaactcagacaaccatgcacactaacaacattctcatttcccctctctgatttctcttgaatggtttgg |
48958584 |
T |
|
| Q |
415 |
caaata---gaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga |
511 |
Q |
| |
|
| |||| |||| ||||||||||||||| |||||||||| | | |||||| ||||||| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
48958585 |
cgaataagagaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatcaagttcaatgaagttgttga |
48958684 |
T |
|
| Q |
512 |
cgatgaagccattacttttgaacactgtgtcaagcatca |
550 |
Q |
| |
|
||||| || |||||||||| | ||| |||||||||| |
|
|
| T |
48958685 |
tgatgagtcccttacttttgaggattgtctcaagcatca |
48958723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 215 - 545
Target Start/End: Complemental strand, 48912283 - 48911950
Alignment:
| Q |
215 |
gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta |
314 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| || |||| ||||||||||| ||||||||||| || |||| ||||||||| |||||||| |
|
|
| T |
48912283 |
gaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgta |
48912184 |
T |
|
| Q |
315 |
caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc |
414 |
Q |
| |
|
|| ||| |||||| |||||| ||||| |||||||||| ||||| ||| ||||| || ||| ||| | ||| | | || |||||| || | ||||| |
|
|
| T |
48912183 |
caccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctcagccttctcttgaatagttctg |
48912084 |
T |
|
| Q |
415 |
caaat---agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga |
511 |
Q |
| |
|
| ||| ||||| |||||||||||||||||| ||||||| | |||||||| ||||||| ||| ||||||| || ||||||||| || ||||||| |
|
|
| T |
48912083 |
cgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttga |
48911984 |
T |
|
| Q |
512 |
cgatgaagccattacttttgaacactgtgtcaag |
545 |
Q |
| |
|
| | || || ||||||||||| ||||| ||||| |
|
|
| T |
48911983 |
caaggattccgttacttttgaaaactgtctcaag |
48911950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 217 - 517
Target Start/End: Original strand, 48974349 - 48974652
Alignment:
| Q |
217 |
acaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtaca |
316 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||| | ||| |||| || ||||| | | ||| || ||||||||||| | |
|
|
| T |
48974349 |
acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcatacaattgcttattagtgaaatggcagaggctcccgaaacatatgtaga |
48974448 |
T |
|
| Q |
317 |
acactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtt--tcccccacctgctttctctagagtggttctc |
414 |
Q |
| |
|
||||||||| ||| | ||| || |||||||| | ||||||||| ||| || || || ||| ||||| | ||||||||||| ||||||| || |
|
|
| T |
48974449 |
gcactgagttgggttgctttgaatttagccaacttaagcactcatg--cacgtccactacacttgtttgtcccctatctgctttctcttgagtggtccta |
48974546 |
T |
|
| Q |
415 |
caaat---agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga |
511 |
Q |
| |
|
||||| ||||||||| || | ||||||||| |||||| ||||||||||| || | || |||||||||||||||| ||| |||||||||||| |
|
|
| T |
48974547 |
caaatgagagaagatggtcccaaatgccaagctcgatgacctattgttttctcataatgctcgatgtactcttctccatcaagctcagtgaagttgttga |
48974646 |
T |
|
| Q |
512 |
cgatga |
517 |
Q |
| |
|
|||||| |
|
|
| T |
48974647 |
cgatga |
48974652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 48965360 - 48965510
Alignment:
| Q |
8 |
gaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggccca |
107 |
Q |
| |
|
|||| ||||||| ||||||||| || ||||||| |||||||| |||||||| | || || || || ||||||| ||| ||||||| || ||||| |
|
|
| T |
48965360 |
gaacccccgcaccaacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagccca |
48965459 |
T |
|
| Q |
108 |
acccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt |
158 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
48965460 |
acccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt |
48965510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 426 - 517
Target Start/End: Original strand, 48962746 - 48962837
Alignment:
| Q |
426 |
tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatga |
517 |
Q |
| |
|
|||||| |||||||||||||||||||| | ||||||||| ||||||| || |||||||| || ||||||||| |||||||||||| |||| |
|
|
| T |
48962746 |
tggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaatga |
48962837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 48958175 - 48958337
Alignment:
| Q |
8 |
gaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggccca |
107 |
Q |
| |
|
|||| ||||| ||||||||||| || ||||||| ||| ||||||||||||||| | || || ||| ||||||| ||| ||| ||||||||||| |
|
|
| T |
48958175 |
gaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggccca |
48958274 |
T |
|
| Q |
108 |
acccctaacgatcaaacc---cttctttccaatgtttctctcctcaaatcccttcgacaacca |
167 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| || ||||| |||| |||||| |
|
|
| T |
48958275 |
ccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaacca |
48958337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 998 - 1036
Target Start/End: Original strand, 48963318 - 48963356
Alignment:
| Q |
998 |
ttggagggagtggtgatgattgtgacatgttggccacgg |
1036 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48963318 |
ttggagggagtggtgatgattgtgacttgttggccacgg |
48963356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 745 - 842
Target Start/End: Original strand, 48963065 - 48963162
Alignment:
| Q |
745 |
aagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcgatggaggagcattgcgcc |
842 |
Q |
| |
|
||||||| ||||||||||||| | |||||| |||||| || || |||||||| || | |||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
48963065 |
aagtcataaacccatgggtatatacagtcggtgatgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgcc |
48963162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 48961413 - 48961486
Alignment:
| Q |
97 |
tgtggggcccaacccctaacgatcaaacccttctt---tccaatgtttctctcctcaaatcccttcgacaacca |
167 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||| | ||||||||||||| |||||||| |||| |||||| |
|
|
| T |
48961413 |
tgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaacca |
48961486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 48965587 - 48965633
Alignment:
| Q |
235 |
tgacccgatgcttctattgcgcatgcaatctcatatagttgtttatc |
281 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| || |||||||| |
|
|
| T |
48965587 |
tgacccgatgcttctattgcacacgcaatctcataaagctgtttatc |
48965633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 59; Significance: 2e-24; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 215 - 369
Target Start/End: Complemental strand, 6449 - 6295
Alignment:
| Q |
215 |
gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta |
314 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| | ||||||||||| || ||||||||||| | |||| | ||||||||||| |||||||| |
|
|
| T |
6449 |
gaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgta |
6350 |
T |
|
| Q |
315 |
caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactc |
369 |
Q |
| |
|
||||||||||||| || | | |||| ||||||||||| ||||||||| ||||| |
|
|
| T |
6349 |
caacactgagttatctggcttcgagtctagccaactcagacactcatgcacactc |
6295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 1373 - 1270
Alignment:
| Q |
245 |
cttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgag |
344 |
Q |
| |
|
|||||| ||| | |||||||||||| | ||||||||||| ||||||| ||| ||||||| |||||||| | ||||||||| || | | ||||||||| |
|
|
| T |
1373 |
cttctagtgcacttgcaatctcatacaattgtttatcagggaaatagcaaaaggttccaaagcatatgtagagtactgagttatctcgctttgagttgag |
1274 |
T |
|
| Q |
345 |
ccaa |
348 |
Q |
| |
|
|||| |
|
|
| T |
1273 |
ccaa |
1270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 6234 - 6163
Alignment:
| Q |
427 |
ggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttca |
498 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| ||||||| || ||||||| || ||||||||| |
|
|
| T |
6234 |
ggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttca |
6163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 426 - 509
Target Start/End: Complemental strand, 12641205 - 12641122
Alignment:
| Q |
426 |
tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgtt |
509 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||| || || ||||| ||||||||||||| |||||||| |
|
|
| T |
12641205 |
tggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttgtt |
12641122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 349
Target Start/End: Complemental strand, 12641388 - 12641285
Alignment:
| Q |
246 |
ttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagc |
345 |
Q |
| |
|
||||||| ||| |||||||| || |||||||||||||||||||| | ||| |||||||||||||| |||||||| ||| |||| | ||| |||||| |
|
|
| T |
12641388 |
ttctattccgctcgcaatctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactgaattatcttgctttgaattgagc |
12641289 |
T |
|
| Q |
346 |
caac |
349 |
Q |
| |
|
|||| |
|
|
| T |
12641288 |
caac |
12641285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 860 - 953
Target Start/End: Complemental strand, 12640768 - 12640675
Alignment:
| Q |
860 |
tggtgacaaggtcagtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaaggggaagtcgacggtgtgaaggctgaggaa |
953 |
Q |
| |
|
||||| || ||| |||||||||||| | ||||||| ||| || || || || | |||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
12640768 |
tggtgtcagggttagtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaa |
12640675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University