View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4494-Insertion-2 (Length: 943)
Name: NF4494-Insertion-2
Description: NF4494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4494-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 602
Target Start/End: Complemental strand, 42286256 - 42285660
Alignment:
| Q |
8 |
atttgactttgattttcttctctgattccaaagaatgatgtagatgaagaagcagccgccataattatatattttgcaatctgaaatttttaaacaaaaa |
107 |
Q |
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| T |
42286256 |
atttgactttgattttcttctctgattccaaagaatgatgtagatgaagaagcagccgccataattatatattttgcaatctgaaatttttaaacaaaaa |
42286157 |
T |
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| Q |
108 |
gttaataatcaaatgtttaattcttcttctaaaagaaaaatttcattaacatgtttccttctctcatggaacaaggataacaaaaaagagatcagttaaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42286156 |
cttaataatcaaatgtttaattcttcttctaaaagaaaaatttcattaacatgtttccttctctcatggaacaaggataacaaaaaagagatcagttaaa |
42286057 |
T |
|
| Q |
208 |
ttaaagaaactatataacaaaataatttaaagaagctagaaagagctgaaatatatatat--ttgannnnnnnnnnnnnnnnnnnnncatgtcagaagaa |
305 |
Q |
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| T |
42286056 |
ttaaagaaactatataacaaaataatttaaagaagctagaaagagctgaaatatatatatatttgatttttttgtggttgtttttttcatgtcagaagaa |
42285957 |
T |
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| Q |
306 |
aaagtagnnnnnnnnnctcacagattgagagcaaaaaggttgcaagaggaaaggatctaaggagacaagagtaatgaagagacgaggagaagaaaacaat |
405 |
Q |
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| T |
42285956 |
aaagtagaaaaaaaaactcacagattgagagcaaaaaggttgcaagaggaaaggatctaaggagacaagagtaatgaagagacgaggagaagaaaacaat |
42285857 |
T |
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| Q |
406 |
atacctagctatttatcttctggctattgttttcttgtgtgtaaaatttagctaccctctcttgttatattcctcaatcattttgtgtcatatgaatatt |
505 |
Q |
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| T |
42285856 |
atacctagctatttatcttctggctattgttttcttgtgtgtaaaatttagctaccctctcttgttatattcctcaatcattttgtgtcatatgaatatt |
42285757 |
T |
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| Q |
506 |
taaataatttattttgctactttacatgcatgcttgtccacccgtatgcatatataacaatatctctttctatgtgtgttttctttcatttaatttg |
602 |
Q |
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| T |
42285756 |
taaataatttattttgctactttacatgcatgcttgtccacccgtatgcatatataacaatatctctttctatgtgtgttttctttcatttaatttg |
42285660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 12805469 - 12805527
Alignment:
| Q |
11 |
tgactttgattttcttctctgattccaaagaatgatgtagatgaagaagcagccgccat |
69 |
Q |
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| T |
12805469 |
tgactttgattttcttgtctgatttccaagaaaggtgtagatgatgaagcagcagccat |
12805527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 601 - 759
Target Start/End: Original strand, 14173829 - 14173987
Alignment:
| Q |
601 |
tgagtctatttagttcaactcaaattattgtattaataacttctggacacttagttttaaattaaaaaatgtaaagagggatgtccccctcaaatcactt |
700 |
Q |
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| T |
14173829 |
tgagtctatttagttcaactcacattattgtattaataacttctggacacttagttttagattaaaaaatgcaaagagggatgtccccctcaaatcactt |
14173928 |
T |
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| Q |
701 |
gcttgtcaggagaagtgaatgagaagatgatcaatcctacttaggtttagtttggtttg |
759 |
Q |
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| T |
14173929 |
gcttgtcaggagaagtgaatgagaagatgatcaatcctacttgggtttagtttggtttg |
14173987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 846 - 943
Target Start/End: Original strand, 14174072 - 14174169
Alignment:
| Q |
846 |
cctgtattgacattgcataaagtaattaagaaaatgagtttatcattaactttattttggaactaaagtgtaaaagcatcactataagtagcgagatc |
943 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14174072 |
cctgtattgacattgcataaagtaattaagaaaatgagtttatcatcaagtttattttggaactaaagtgtaaaagcatcactataagttgcgagatc |
14174169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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