View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4494-Insertion-3 (Length: 778)
Name: NF4494-Insertion-3
Description: NF4494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4494-Insertion-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 680; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Complemental strand, 1648558 - 1647782
Alignment:
| Q |
8 |
gattattaaccattcaatcaattaaaatggacatctttagactagatgacaatttgacaaatgaatactactaggaagataagatatgcatgaatgaa-- |
105 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1648558 |
gattattaaccattcaatcaagtaaaatggacatctttagactagatgacaaattgacaaatgaatactactaggaagataagatatgcatgaatgaatg |
1648459 |
T |
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| Q |
106 |
--attcactcaaaaatgaataacgactcttgccttttgagtctcggtcaattttctcccgaagcgaggaggagcaggacgttttggaagccttttaacat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1648458 |
aaattcactcaaaaatgaataacgactcttgccttttgagtctcggtcaattttctcccgaagcgaggaggagcaggacgttttggaagccttttaacat |
1648359 |
T |
|
| Q |
204 |
ctacatcagcaccacctcttcataacaaaaacatgaaaatagtcaggttgttatgtcattgcagctgtaaagtaactgataaacagaataggtgccacag |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1648358 |
ctacatcagcaccacctcttcataacaaaaacatgaaaatagtcaggttgttatgtcattgcagctgtaaagtaactgataaacagaataggtgccacag |
1648259 |
T |
|
| Q |
304 |
tgtactcttcatacacaacaattcattagattgcatactgaacttattttggtcttacctgcaattctctatatcttattggttatcatgtatcccattt |
403 |
Q |
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| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
1648258 |
tatactcttcatacacaagaattcattagattgcatactgaacttattttagtcttacctacaattttctatatcttattggttatcatgtatcccattt |
1648159 |
T |
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| Q |
404 |
caccactatatgtacaaggtagtgttgcaatgggaaaatgacac--agaaaacatttttgtaacaataacaataagggttaactatgtttgtagtcccta |
501 |
Q |
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| T |
1648158 |
caccactatatgtacaaggtagtgttgcaatgggaaaatgacacaaagaaaacatttttgtaacaataacaataagggttaactatgtctgtagtcccta |
1648059 |
T |
|
| Q |
502 |
taacactacgaccttttcagtttagtccttacataaattttgttcaattttagccctacttttattaatttttacagaaaatgaatgtttttagtgcctg |
601 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1648058 |
taacactacgaccttttcagtttagtccctacataaattttattcaattttagccctacttttattaatttttacagaaaatgaatgtttttagtgcctg |
1647959 |
T |
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| Q |
602 |
cgtttagtccttatgaaattaaaatgnnnnnnntttatgcagagactaaatttgaaaatttataggaattaaaaacatatttaacccaacaaaaactaac |
701 |
Q |
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| T |
1647958 |
cgtttagtccttatgaaattaaaatgaacaaaatttatgcagagactaaatttgaaaatttataggaattaaaaacatatttaacccaacaaaaactaac |
1647859 |
T |
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| Q |
702 |
ctatgtcagcaacagaatggatgcaattaaggaaatggtaaaaagcttgattgcagaaggcaagaaaatacctgctg |
778 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
1647858 |
ctatgtcagcaacagaatggatgcaattaaggaaatggtacaaagcttgattgcagaaggcaagaaagtacctgctg |
1647782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 533
Target Start/End: Original strand, 40158144 - 40158203
Alignment:
| Q |
474 |
taagggttaactatgtttgtagtccctataacactacgaccttttcagtttagtccttac |
533 |
Q |
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|||||||||| ||||||| |||||||||||| | | |||||||| |||||||||||||| |
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| T |
40158144 |
taagggttaaatatgtttttagtccctataaaattgggaccttttaagtttagtccttac |
40158203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 259 - 403
Target Start/End: Complemental strand, 37998866 - 37998722
Alignment:
| Q |
259 |
tcattgcagctgtaaagtaactgataaacagaataggtgccacagtgtactcttcatacacaacaattcattagattgcatactgaacttattttggtct |
358 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37998866 |
tcattgcagctgttaagtaactgatatacagaataggtgccacagtatactcttcatacacaacaattcattagattgcatactgaacttattttagtct |
37998767 |
T |
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| Q |
359 |
tacctgcaattctctatatcttattggttatcatgtatcccattt |
403 |
Q |
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||| ||||| ||||||||||||| |||||||||| ||||||| |
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| T |
37998766 |
tactgtcaattttctatatcttatttcttatcatgtaacccattt |
37998722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 660 - 696
Target Start/End: Complemental strand, 22971806 - 22971770
Alignment:
| Q |
660 |
tttataggaattaaaaacatatttaacccaacaaaaa |
696 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
22971806 |
tttataggaactaaaaacatatttaacccaacaaaaa |
22971770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 660 - 696
Target Start/End: Original strand, 23816592 - 23816628
Alignment:
| Q |
660 |
tttataggaattaaaaacatatttaacccaacaaaaa |
696 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
23816592 |
tttataggaactaaaaacatatttaacccaacaaaaa |
23816628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 533
Target Start/End: Complemental strand, 861774 - 861717
Alignment:
| Q |
476 |
agggttaactatgtttgtagtccctataacactacgaccttttcagtttagtccttac |
533 |
Q |
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|||||||| ||||||| |||||||||||| | | |||||||| |||||||||||||| |
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| T |
861774 |
agggttaaatatgtttttagtccctataaaattgtgaccttttaagtttagtccttac |
861717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 660 - 696
Target Start/End: Complemental strand, 11670029 - 11669993
Alignment:
| Q |
660 |
tttataggaattaaaaacatatttaacccaacaaaaa |
696 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
11670029 |
tttatagggattaaaaacatatttaacccaacaaaaa |
11669993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 660 - 696
Target Start/End: Complemental strand, 53569064 - 53569028
Alignment:
| Q |
660 |
tttataggaattaaaaacatatttaacccaacaaaaa |
696 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
53569064 |
tttataggaactaaaaacatatttaacccaacaaaaa |
53569028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 48736534 - 48736574
Alignment:
| Q |
659 |
atttataggaattaaaaacatatttaacccaacaaaaactaa |
700 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
48736534 |
atttataagaattaaaaacatatttaacccaa-aaaaactaa |
48736574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 696
Target Start/End: Original strand, 37707103 - 37707142
Alignment:
| Q |
657 |
aaatttataggaattaaaaacatatttaacccaacaaaaa |
696 |
Q |
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| T |
37707103 |
aaatttatagggattaaaaatatatttaacccaacaaaaa |
37707142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 696
Target Start/End: Complemental strand, 1737464 - 1737431
Alignment:
| Q |
663 |
ataggaattaaaaacatatttaacccaacaaaaa |
696 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |
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| T |
1737464 |
ataggaactaaaaacatatttaacccaacaaaaa |
1737431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 696
Target Start/End: Complemental strand, 16080679 - 16080645
Alignment:
| Q |
662 |
tataggaattaaaaacatatttaacccaacaaaaa |
696 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |
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| T |
16080679 |
tataggaattaaaaacatatttaacccaaaaaaaa |
16080645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 475 - 533
Target Start/End: Complemental strand, 53518199 - 53518141
Alignment:
| Q |
475 |
aagggttaactatgtttgtagtccctataacactacgaccttttcagtttagtccttac |
533 |
Q |
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||||||||| ||||||| |||||||||||| | | |||||||| |||||||||||||| |
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| T |
53518199 |
aagggttaaatatgtttttagtccctataaaattgggaccttttaagtttagtccttac |
53518141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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