View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4494-Insertion-5 (Length: 621)
Name: NF4494-Insertion-5
Description: NF4494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4494-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 7 - 500
Target Start/End: Complemental strand, 40708610 - 40708091
Alignment:
| Q |
7 |
aatgaagctatatcacaatcaccaaagatgaaagcaattatcgtcaaactcaaatggatagacggagctgatgctttggaaaccctagcagagccattga |
106 |
Q |
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| T |
40708610 |
aatgaagctatatcacaatcaccaaagatgaaagcaattatcgtcaaactcaaatggatggacggagctgatgctttggaaaccctagcagagccattga |
40708511 |
T |
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| Q |
107 |
cgtctccccattcacgctgtcaaatgaatattgttgcctcactataatttactatagaaaccatagtggagacaaatatttatctctaattaattggtta |
206 |
Q |
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| T |
40708510 |
cgtctccccattcacgctgtcaaatgaatattgttgcctcactataatttattatagaaaccatagtggagacaaatatttatctctaattaattggtta |
40708411 |
T |
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| Q |
207 |
taaaaatttctttcactagtaaattagagtgtataagaggtacacgatc-------------cataaaataccttccaaataattgaaattaaactacaa |
293 |
Q |
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| T |
40708410 |
taaaaatttcattcactagtaaattagagtgtataagaggtacacgatccatataacaagtacataatataccttccaactaattgaaattaaactacaa |
40708311 |
T |
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| Q |
294 |
cctaaagtgaaaatttattgggtcaaacatcattcatagaaaagacaatgacctttgtttgtcttggtcaaaaatcatctccaagatcggataggtggat |
393 |
Q |
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| T |
40708310 |
cctaaagtgaaaatttattgggtcaaacatcattcatagaaaagacaatgacctttgtttgtcttggtcaaaaatcatttccaagaccggataggtggat |
40708211 |
T |
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| Q |
394 |
atggcgacctcattcatctaaccgttacatagttagtagtgcttatca-------------gttgttgataatggagtggtggttaataatagtaataat |
480 |
Q |
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| T |
40708210 |
atggcgacctcattcatctaaccgttacatagttagtactgcttatcagttgttgatcgaggttgttgataatggagtggtggttaataataataataat |
40708111 |
T |
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| Q |
481 |
aatgttcttcactttattct |
500 |
Q |
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| T |
40708110 |
aatgtccttcactttattct |
40708091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 540 - 621
Target Start/End: Complemental strand, 40708088 - 40708007
Alignment:
| Q |
540 |
gtgacggttgcttcataatcgaattcctactaaagataacttagttcgacgtcaagtgatttatgttaatgaccaaccgtgt |
621 |
Q |
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| T |
40708088 |
gtgacggttgcttcaaaatcggattcctactaaagataacttagttcgacatcaagtgatttatgttaatgaccaaccgtgt |
40708007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 40723118 - 40723018
Alignment:
| Q |
148 |
ctataatttactatagaaaccatagtggagacaaatatttatctctaattaattggttataaaaatttctttcactagtaaattagagtgtataagaggt |
247 |
Q |
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| T |
40723118 |
ctataatttattatataaaccgcaatggagacatatatttgtctctaattaattggttataagattttcattcaagagtaaatta-agcgtacaagaggt |
40723020 |
T |
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| Q |
248 |
ac |
249 |
Q |
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|| |
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| T |
40723019 |
ac |
40723018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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