View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4494-Insertion-6 (Length: 556)
Name: NF4494-Insertion-6
Description: NF4494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4494-Insertion-6 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Original strand, 42210124 - 42210672
Alignment:
| Q |
8 |
tattggtgggtcacagtcatggtgcaagtagtccatggcagatgcaacatcaatggcaatgtttaacctttgcaacaaggttagagaagatcctgactca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42210124 |
tattggtgggtcacagtcatggtgcaagtagtccatggcagatgcaacatcaatggcaatgtttaacctttgcaacaaggttagagaagatcctgactca |
42210223 |
T |
|
| Q |
108 |
aaatcttccgggtataaactcatctccaaattaccattaagcatgaattgcaaaacaagggccttaaaatcatcccccttgtagtcagtgctggagcaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42210224 |
aaatcttccgggtataaactcatctccaaattaccattaggcatgaattgcaaaacaagggccttaaaatcatcccccttgtagtcagtgctggagcaag |
42210323 |
T |
|
| Q |
208 |
aagtgatcacctttaccagattccgatgcctaacatttttcaaagcttcacattctgcactaaaactctgagaggctttgctttgttgcaggtcaagaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42210324 |
aagtgatcacctttaccagattccgatgcctaacatttttcaaagcttcacattctgcactaaaactctgagaggctttgctttgttgcaggtcaagaac |
42210423 |
T |
|
| Q |
308 |
tttaacagcaagcgtggtggtttgattttcataactgctgatgttgaacacacccttgtaaacagatccaaagcctccttttccaaccatatttgcagct |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42210424 |
tttaacagcaagtgtggtggtttgattttcataactgctgatgttgaacacacccttgtaaacagatccaaagcctccttttccaaccatatttgcagct |
42210523 |
T |
|
| Q |
408 |
gaaaaattgttcgtagcaagcctaatatcaccataggatatattttgatgcaacccttttatagtagttgatgacaaacttgttttctctgccttgtgtt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42210524 |
gaaaaattgttcgtagcaagcctaatatcaccataggatatattttgatgcaacccttttatagtagttgatgacaaacttgttttctctgccttgtgtt |
42210623 |
T |
|
| Q |
508 |
tcttctttaaggacattagcagccagaatagatagatcattgaagcaaa |
556 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42210624 |
tcttctttaaggacattagcagccaaaatagatagatcattgaagcaaa |
42210672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 514
Target Start/End: Original strand, 42222349 - 42222855
Alignment:
| Q |
8 |
tattggtgggtcacagtcatggtgcaagtagtccatggcagatgcaacatcaatggcaatgtttaacctttgcaacaaggttagagaagatcctgactca |
107 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42222349 |
tattggtggatcacaatcatggtgcaagtagtccatggcagatgcaacatcaatggcaatgtttaacctttgcaacaaggttagagaagatcctgactca |
42222448 |
T |
|
| Q |
108 |
aaatcttccgggtataaactcatctccaaattaccattaagcatgaattgcaaaacaagggccttaaaatcatcccccttgtagtcagtgctggagcaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42222449 |
aaatcttccgggtataaactcatctccaaattaccattaggcatgaattgcaaaacaagggccttaaaatcatcccccttgtagtcagtgctggagcaag |
42222548 |
T |
|
| Q |
208 |
aagtgatcacctttaccagattccgatgcctaacatttttcaaagcttcacattctgcactaaaactctgagaggctttgctttgttgcaggtcaagaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42222549 |
aagtgatcacctttaccagattccgatgcctaacatttttcaaagcttcacattctgcactaaaactctgagaggctttgctttgttgcaggtcaagaac |
42222648 |
T |
|
| Q |
308 |
tttaacagcaagcgtggtggtttgattttcataactgctgatgttgaacacacccttgtaaacagatccaaagcctccttttccaaccatatttgcagct |
407 |
Q |
| |
|
|||||||||||| || || |||||| ||||| || |||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||| |
|
|
| T |
42222649 |
tttaacagcaagtgtagttgtttgactttcaaaagtgcttatgttgaacacacctttgtaaacagatccaaaccctccttttccaaccaagtttgtagct |
42222748 |
T |
|
| Q |
408 |
gaaaaattgttcgtagcaagcctaatatcaccataggatatattttgatgcaacccttttatagtagttgatgacaaacttgttttctctgccttgtgtt |
507 |
Q |
| |
|
||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||| || ||| |||||||||||| |||||||||| ||||| | | |
|
|
| T |
42222749 |
gaaaagttgtttgtagcaagcttaatatcaccataggatatattttgagtcaaccccaatagagtggttgatgacaaaattgttttctcctccttgcgct |
42222848 |
T |
|
| Q |
508 |
tcttctt |
514 |
Q |
| |
|
||||||| |
|
|
| T |
42222849 |
tcttctt |
42222855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 209 - 543
Target Start/End: Original strand, 42197748 - 42198083
Alignment:
| Q |
209 |
agtgatcacctttaccagattccgatgcctaacatttttcaaagcttcacattctgcactaaaactctgagaggctttgctttgttgcaggtcaagaact |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
42197748 |
agtgatcacctttaccagattccgatgcctaacatttttcaaagcttcacattctgcacaaaaactctgagaggccttgctttgttgcaggtcaaaaact |
42197847 |
T |
|
| Q |
309 |
ttaacagcaagcgtggtggtttgattttcataactgctgatgttgaacacacccttgtaaacagatccaaagcctccttttccaaccatatttgcagctg |
408 |
Q |
| |
|
||||||||||| || || |||||| |||||||| |||||||||| | |||||||||||||||||| ||||| |||||||||||||||| |||||| ||| |
|
|
| T |
42197848 |
ttaacagcaagtgtcgttgtttgactttcataagtgctgatgttaagcacacccttgtaaacagagccaaaccctccttttccaaccaagtttgcatctg |
42197947 |
T |
|
| Q |
409 |
aaaaattgttcgtagcaagcctaatatcaccataggatatattttgatgcaacccttttatagtagttgatgacaaacttgttttctctgccttgtgttt |
508 |
Q |
| |
|
| |||||||| ||||||||||||||||||| || |||| ||||||| |||||| |||| || |||||||||||||||||||||||| |||||||||| |
|
|
| T |
42197948 |
agaaattgtttgtagcaagcctaatatcactgtatgatacattttgaggcaaccaatttagaggagttgatgacaaacttgttttctccaccttgtgttt |
42198047 |
T |
|
| Q |
509 |
c-ttctttaaggacattagcagccagaatagataga |
543 |
Q |
| |
|
| ||||||||||||||| ||||||| | |||||||| |
|
|
| T |
42198048 |
ctttctttaaggacatttgcagccacagtagataga |
42198083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 476 - 553
Target Start/End: Complemental strand, 33701289 - 33701212
Alignment:
| Q |
476 |
tgatgacaaacttgttttctctgccttgtgtttcttctttaaggacattagcagccagaatagatagatcattgaagc |
553 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33701289 |
tgatgacaaacttgttttctccgccttgtgtttcttctttaaggacattagcagccaaaatagatagatcattgaagc |
33701212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 42191130 - 42191202
Alignment:
| Q |
142 |
cattaagcatgaattgcaaaacaagggccttaaaatcatcccccttgtagtcagtgctggagcaagaagtgat |
214 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
42191130 |
cattaggcatgaattgcataacaagggccttaaaatcacaccccttgtaatcagtgctggagcaagaagtgat |
42191202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University