View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4494-Insertion-7 (Length: 542)
Name: NF4494-Insertion-7
Description: NF4494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4494-Insertion-7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 8 - 542
Target Start/End: Original strand, 36061727 - 36062265
Alignment:
| Q |
8 |
ttggtgacagtatacacttatttatatcgatggtatatcaaacttaaactctagaaaagaaatccacaattatgaatctacgaccgtgatatgtaagccc |
107 |
Q |
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| T |
36061727 |
ttggtgacggtatacacttatttatatcgacggtatatcaaacttaaactctagaaaagaaatccacaattatgagtctacgaccgtgatatgtgagccc |
36061826 |
T |
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| Q |
108 |
aaactcaannnnnnngatgtctccgcgttggtaatgtggccgcaatcgaggcctatttaactataaatctcagtaaaatcacagattacaacaaaaccgt |
207 |
Q |
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| T |
36061827 |
aaactcaatttttttgatgtctccgcgttggtaatgtggccgcaatcgaggcctatttaactataaatctcagtaaaatcacagattacaacaaaaccgt |
36061926 |
T |
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| Q |
208 |
gaacatgaccgcaaactcaatctaaaaccttgatatttaagcacatgagaactatctttgttctactttgaacccatgttcttgtatttctgtttctgtt |
307 |
Q |
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| T |
36061927 |
gaacatgaccgcaacctcaatctaaaaccttgatatttaagcacatgagaactatctttgttctactttgaacccatgttcttgtatttctgtttctgtt |
36062026 |
T |
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| Q |
308 |
atcaaatatatcagagttgtaacatgataaaaatac----tatatgcatctttaaggttaataaagtgaagaacttaagaatgtttaactaattgttctt |
403 |
Q |
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| T |
36062027 |
atcaaatatatcagagttgtaacatgataaaaatactatatatatgcatctttaaggttaataaagtgaagaacttaagaatgtttaactaattgttctt |
36062126 |
T |
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| Q |
404 |
acatttactgaagtataatattgcctcttgcacaatataaaaggtaaatgtatagaacataccattcaaaggatttgacaagatcaatctctgagaccaa |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36062127 |
acatttactgaagtataatattgcctcttgcacaatataaaaggtaaatgtataaaacataccattcaaaggatttgacaagatcaatctctgagaccaa |
36062226 |
T |
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| Q |
504 |
tttctccatcccttttgtaagctcttctactactacacc |
542 |
Q |
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| T |
36062227 |
tttctccatcccttttgtaagctcttctactactacacc |
36062265 |
T |
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