View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4494_high_1 (Length: 433)

Name: NF4494_high_1
Description: NF4494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4494_high_1
NF4494_high_1
[»] chr3 (30 HSPs)
chr3 (22-423)||(2659645-2660049)
chr3 (34-271)||(2501326-2501563)
chr3 (30-266)||(2491253-2491486)
chr3 (33-270)||(2644990-2645227)
chr3 (30-258)||(9562631-9562856)
chr3 (98-267)||(7334930-7335102)
chr3 (98-262)||(2475885-2476052)
chr3 (69-230)||(7443693-7443854)
chr3 (52-270)||(7325053-7325274)
chr3 (108-268)||(2630579-2630742)
chr3 (109-257)||(13497426-13497577)
chr3 (122-267)||(755291-755439)
chr3 (98-267)||(9566481-9566653)
chr3 (316-399)||(9595168-9595251)
chr3 (107-267)||(2474354-2474517)
chr3 (93-261)||(9595291-9595462)
chr3 (316-402)||(2644879-2644968)
chr3 (305-400)||(7324950-7325045)
chr3 (127-266)||(747785-747927)
chr3 (307-384)||(2630766-2630843)
chr3 (318-394)||(747672-747748)
chr3 (307-399)||(2501596-2501688)
chr3 (316-394)||(679754-679832)
chr3 (316-402)||(2491521-2491607)
chr3 (335-396)||(9562505-9562566)
chr3 (311-394)||(755167-755250)
chr3 (107-210)||(7398891-7398994)
chr3 (169-230)||(679906-679967)
chr3 (107-212)||(2455076-2455181)
chr3 (340-384)||(2476115-2476159)
[»] scaffold0097 (1 HSPs)
scaffold0097 (33-270)||(33827-34064)


Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 22 - 423
Target Start/End: Complemental strand, 2660049 - 2659645
Alignment:
Q  22 tcactcgtggtggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2660049 tcactcgtggtggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccagctcttccttttgatc 2659950  T
Q  122 tcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659949 tcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgc 2659850  T
Q  222 aaagaagca---tcgtatgtcaaccaagcgccaccacctcatgctaacaaattcttgtgattatgattattattatgatcgtgacatagttatgtgcgat 318  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659849 aaagaagcatcttcgtatgtcaaccaagcgccaccacctcatgctaacaaattcttgtgattatgattattattatgatcgtgacatagttatgtgcgat 2659750  T
Q  319 tctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacctga 418  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2659749 tctccaatcccttcaattttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacatcactgcatcgacctga 2659650  T
Q  419 tgatg 423  Q
    |||||    
T  2659649 tgatg 2659645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 34 - 271
Target Start/End: Original strand, 2501326 - 2501563
Alignment:
Q  34 gaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcctgaga 133  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   | ||| |||||| |||||| ||| |||||  |||||||||    
T  2501326 gaaacaaccaacactcagaggcagcgattggtcgccggaaccctaacatgcccaccg---ctggaacttccaactcttcttttcgatcttttgcctgaga 2501422  T
Q  134 ttctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagca--- 230  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| | |||||||||||||| ||||||||||| ||       
T  2501423 ttctgtgcaggcttccggtgaaattactagtacagcttcgatgcctttgtaagttcttcaattctttaatttctgatcctaaattcgcaaagaaacatct 2501522  T
Q  231 tcgtatgtcaaccaagcgccaccacctcatgctaacaaatt 271  Q
    |||||||||||||||||||| | || |||||||||||||||    
T  2501523 tcgtatgtcaaccaagcgccgctacatcatgctaacaaatt 2501563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 2491253 - 2491486
Alignment:
Q  30 ggtggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcct 129  Q
    |||||||||||||| |||||||| | | ||||   || ||||||||||||||||||||||    |||||||||||| |||||||||||||| ||||||||    
T  2491253 ggtggaaacaaccaccactcagaagaatcgat---ccaccggaaccctaacatgcccacca---ccggagcttccaactcttccttttgatgtcctgcct 2491346  T
Q  130 gagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagc 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||| |||||||| ||||    
T  2491347 gagattctgtgtaggcttccggtgaaattactggtacagcttcgatgcctttgtaagtttttcaattctttaatttctgatcctaaattcgcaaaaaagc 2491446  T
Q  230 atcgt---atgtcaaccaagcgccaccacctcatgctaac 266  Q
    ||| |    ||||||| |||||||||||||||||| ||||    
T  2491447 atcttcaattgtcaacaaagcgccaccacctcatggtaac 2491486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 33 - 270
Target Start/End: Complemental strand, 2645227 - 2644990
Alignment:
Q  33 ggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcctgag 132  Q
    |||||||||||||||||| |||| |||||||| |||||||||||||| || | |||||   | |||||||||| |||||||| |||||||||| ||||||    
T  2645227 ggaaacaaccaacactcaaaggcggcgattggtcgccggaaccctaaaatacacaccg---ctggagcttccaactcttcctgttgatctccttcctgag 2645131  T
Q  133 attctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagca-- 230  Q
    ||||| |||||||||||||||||||||||  |||||||||||| |||||||||||| ||||||||| | |||||||||||||| |||| |||||| ||      
T  2645130 attctttgtaggcttccggtgaaattacttatacagcttcgatacgtttgtaagttattcaattctttaatttctgatcctaaattcgtaaagaaacacc 2645031  T
Q  231 -tcgtatgtcaaccaagcgccaccacctcatgctaacaaat 270  Q
     ||||||| ||||||| ||||||||||||||||||||||||    
T  2645030 ttcgtatggcaaccaaacgccaccacctcatgctaacaaat 2644990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 9562856 - 9562631
Alignment:
Q  30 ggtggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcct 129  Q
    |||||||||||||| |||||||||| ||||||   || ||||||||||||||||||||||    |||||||||||| |||||||||||||||| ||||||    
T  9562856 ggtggaaacaaccaccactcagaggaagcgat---ccaccggaaccctaacatgcccacca---ccggagcttccaactcttccttttgatcttctgcct 9562763  T
Q  130 gagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagc 229  Q
    || ||||| ||||||||||||||||||||||| ||||||||||||||  | ||| |||| ||||||||| | |||||  |||| || || ||||||||||    
T  9562762 gaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtgagttcttcaattctttaatttccaatcccaaatttgcaaagaagc 9562663  T
Q  230 a---tcgtatgtcaaccaagcgccaccacctc 258  Q
    |   ||   ||||||| |||||||||||||||    
T  9562662 accttcaattgtcaactaagcgccaccacctc 9562631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 98 - 267
Target Start/End: Complemental strand, 7335102 - 7334930
Alignment:
Q  98 agcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattc 197  Q
    |||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| || |||||    
T  7335102 agcttcctactcttccgtttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgtctctgtaagttctttaattc 7335003  T
Q  198 tcttatttctgatcctaatttcgcaaagaagca---tcgtatgtcaaccaagcgccaccacctcatgctaaca 267  Q
    | |||| |||||||| || ||||||||||||||   ||   ||||||| |||||||||||||||||| |||||    
T  7335002 tgttatctctgatccaaaattcgcaaagaagcaccttcaattgtcaacaaagcgccaccacctcatggtaaca 7334930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 2475885 - 2476052
Alignment:
Q  98 agcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattc 197  Q
    |||||||  ||||||| |||||| |||||||||||||||||| |||| | || || |||||||||||||||||||| ||| |||||||||||||||||||    
T  2475885 agcttcccactcttccctttgatgtcctgcctgagattctgtttaggttacctgtcaaattactcgtacagcttcggtgcctttgtaagtttttcaattc 2475984  T
Q  198 tcttatttctgatcctaatttcgcaaagaagca---tcgtatgtcaaccaagcgccaccacctcatgc 262  Q
    |||||||||||||||||| ||||||||||| ||   ||   ||||||| |||||||||||||||||||    
T  2475985 tcttatttctgatcctaaattcgcaaagaaacaccttcaattgtcaacaaagcgccaccacctcatgc 2476052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 7443854 - 7443693
Alignment:
Q  69 cggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacag 168  Q
    |||||||||||||| |||||||||||||||||||||  ||||||| || |||||||| ||||||||||| || |||||||| |||||||||||| ||||     
T  7443854 cggaaccctaacatacccaccggagccggagcttcccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaa 7443755  T
Q  169 cttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagca 230  Q
    ||||| ||| | |||||||| ||||||||| | ||||||||||| |||||||| ||||||||    
T  7443754 cttcggtgcctctgtaagttcttcaattctttaatttctgatcccaatttcgccaagaagca 7443693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 52 - 270
Target Start/End: Complemental strand, 7325274 - 7325053
Alignment:
Q  52 aggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccgg 151  Q
    ||||| ||||||  ||||||||||||||||| || |||   ||| ||||||||| |||||||||| ||| || | ||||||||||| || |||||||| |    
T  7325274 aggcaacgattgatcgccggaaccctaacattccaaccacggccagagcttccaactcttcctttcgatgtcttacctgagattctctgcaggcttcctg 7325175  T
Q  152 tgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagcatcgt---atgtcaaccaagcg 248  Q
    ||||||||||| |||||||||| ||| | |||||||| ||||||||| | ||||||||||| | |||||||||||| |||| |    | ||||| |||||    
T  7325174 tgaaattactcatacagcttcggtgcctctgtaagttcttcaattctttaatttctgatcccactttcgcaaagaaacatcttcaattatcaactaagcg 7325075  T
Q  249 ccaccacctcatgctaacaaat 270  Q
    |||||||||| || ||||||||    
T  7325074 ccaccacctcgtgttaacaaat 7325053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 108 - 268
Target Start/End: Original strand, 2630579 - 2630742
Alignment:
Q  108 tcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttct 207  Q
    |||||| |||||| | ||| |||| ||||| |||| ||||||||||||||||||||| |||||||| ||| |||||||||| |||||||| |||||||||    
T  2630579 tcttccgtttgatgttctgactgacattctctgtatgcttccggtgaaattactcgtgcagcttcggtgcctttgtaagttcttcaattcacttatttct 2630678  T
Q  208 gatcctaatttcgcaaagaagcatcgt--at-gtcaaccaagcgccaccacctcatgctaacaa 268  Q
    |||||||| |||| ||||||||||| |  || |||||| ||||||| |||||| ||||||||||    
T  2630679 gatcctaaattcgtaaagaagcatcttcaatcgtcaactaagcgccgccaccttatgctaacaa 2630742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 109 - 257
Target Start/End: Original strand, 13497426 - 13497577
Alignment:
Q  109 cttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttctg 208  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||||| ||||||||| | || |||||||| |||||| | || ||||    
T  13497426 cttccatttgatctcctgcctgagatcctttgtaggcttccggtgaagttacttgtacaacttcgatgcctctgcaagttttttaattctttgatctctg 13497525  T
Q  209 atcctaatttcgcaaagaagca---tcgtatgtcaaccaagcgccaccacct 257  Q
    ||||| | ||||||||||||||   || | ||||||||| ||||||||||||    
T  13497526 atcctgaattcgcaaagaagcaccttcatttgtcaaccatgcgccaccacct 13497577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 267
Target Start/End: Complemental strand, 755439 - 755291
Alignment:
Q  122 tcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgc 221  Q
    |||||||||||||||| |||||||||||  | |||||||||| |||||| || ||| | ||||||| |||||||||||||||||||||||| || |||||    
T  755439 tcctgcctgagattctttgtaggcttcccatcaaattactcggacagctgcggtgcctctgtaagtctttcaattctcttatttctgatccaaaattcgc 755340  T
Q  222 aaagaagcatcgt---atgtcaaccaagcgccaccacctcatgctaaca 267  Q
    ||| || |||| |    ||||||| |||||||||||||||||| |||||    
T  755339 aaaaaaacatcttcaattgtcaacaaagcgccaccacctcatgttaaca 755291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 98 - 267
Target Start/End: Complemental strand, 9566653 - 9566481
Alignment:
Q  98 agcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattc 197  Q
    |||||||  ||||||| || ||| || ||||||||||||| |||||||||||  |||||||||||| ||||||||| ||| | || ||||  ||||||||    
T  9566653 agcttcctactcttcccttcgatgtcttgcctgagattctttgtaggcttcccatgaaattactcggacagcttcggtgcctctgcaagtccttcaattc 9566554  T
Q  198 tcttatttctgatcctaatttcgcaaagaagcatcgt---atgtcaaccaagcgccaccacctcatgctaaca 267  Q
    ||||||||||||||| || |||||||| || |||| |    ||||||| |||||||| ||||||||| |||||    
T  9566553 tcttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgccatcacctcatgttaaca 9566481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 9595251 - 9595168
Alignment:
Q  316 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatgga 399  Q
    |||||||||||||  ||| |||| |||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  9595251 gattctccaatccactcagttttttctacttctaccattgttacacagacacaactttaccctcctaatactctcacaaatgga 9595168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 267
Target Start/End: Original strand, 2474354 - 2474517
Alignment:
Q  107 ctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttc 206  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| || |||||||  ||||||||||| ||| | |||||||| || |||||| | |||||    
T  2474354 ctcttccctttgatctcctgcctgagattctctgtaggcttcccgtcaaattacctgtacagcttcggtgcctctgtaagttctttaattctttaatttc 2474453  T
Q  207 tgatcctaatttcgcaaagaagca---tcgtatgtcaaccaagcgccaccacctcatgctaaca 267  Q
      |||| |  ||||||||||| ||   ||   | |||| ||||||||||||||||||| |||||    
T  2474454 caatcccagattcgcaaagaaacaccttcaattatcaaacaagcgccaccacctcatggtaaca 2474517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 261
Target Start/End: Complemental strand, 9595462 - 9595291
Alignment:
Q  93 gccggagcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttc 192  Q
    ||||||||||||| |||||||||| |||||  |  |||| ||||| || |||||||| ||||| || ||| | || ||||||||||| |||||||| ||     
T  9595462 gccggagcttccaactcttcctttcgatctaattgctgaaattctatgcaggcttcctgtgaagtttctctttcaacttcgatgcgtatgtaagttcttt 9595363  T
Q  193 aattctcttatttctgatcctaatttcgcaaagaagca---tcgtatgtcaaccaagcgccaccacctcatg 261  Q
     ||||||||||||||||||| || || |||||||| ||   ||   ||||||| ||||||||||||||||||    
T  9595362 cattctcttatttctgatccaaaatttgcaaagaatcaccttcaattgtcaacaaagcgccaccacctcatg 9595291  T

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Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 402
Target Start/End: Complemental strand, 2644968 - 2644879
Alignment:
Q  316 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattc---ctaatactctcacaaatggacat 402  Q
    ||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||   ||| |||||||||||| ||||||    
T  2644968 gattccccaatcccttcacctttttctacttctaccattgttacacaaacacaactttaccttcctactagtactctcacaaacggacat 2644879  T

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Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 400
Target Start/End: Complemental strand, 7325045 - 7324950
Alignment:
Q  305 tagttatgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggac 400  Q
    |||||||||  ||||| ||||| ||||| ||||| ||||||||| ||||| ||||||||||||||||  ||||| ||| |||||||||||||||||    
T  7325045 tagttatgtatgattccccaattccttcgcttttttctacttctgccgtttttacacaaacacaactacacatttctagtactctcacaaatggac 7324950  T

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Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 266
Target Start/End: Complemental strand, 747927 - 747785
Alignment:
Q  127 cctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgcaaaga 226  Q
    |||||| ||||  ||||||||||  | |||||||||||||| ||||||||| | |||||||||||  ||||||||||| ||||||| |  ||||||||||    
T  747927 cctgagtttctcggtaggcttcccatcaaattactcgtacaacttcgatgcctctgtaagtttttttattctcttattgctgatccaacattcgcaaaga 747828  T
Q  227 agca---tcgtatgtcaaccaagcgccaccacctcatgctaac 266  Q
    ||||   ||   | ||||| |||||||||||||||||| ||||    
T  747827 agcaccttcaattatcaactaagcgccaccacctcatgataac 747785  T

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Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 384
Target Start/End: Original strand, 2630766 - 2630843
Alignment:
Q  307 gttatgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaat 384  Q
    |||||||  ||||||||||||||||| ||||| |||||||| ||| ||||| |||||||||||||||||  |||||||    
T  2630766 gttatgtatgattctccaatcccttcgcttttttctacttcaaccattgttgcacaaacacaactttaccctcctaat 2630843  T

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Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 747748 - 747672
Alignment:
Q  318 ttctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaa 394  Q
    |||||||||||| ||  |||| |||||||||| |||||||||||| ||||||||||||  |||||||||||| ||||    
T  747748 ttctccaatcccctcggttttatctacttctatcgttgttacacatacacaactttaccctcctaatactcttacaa 747672  T

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Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 2501596 - 2501688
Alignment:
Q  307 gttatgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatgga 399  Q
    |||||||  ||||| ||||||||||  | ||| ||||||||| | ||| ||||||||||||||||  ||||||||| ||||||||||||||||    
T  2501596 gttatgtatgattccccaatccctttgcctttttctacttctgcagttcttacacaaacacaactacacattcctagtactctcacaaatgga 2501688  T

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Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 394
Target Start/End: Complemental strand, 679832 - 679754
Alignment:
Q  316 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaa 394  Q
    |||||||||||||| ||  |||| || |||||||||||||||||||| ||||||||||||  |||||||| ||| ||||    
T  679832 gattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaa 679754  T

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Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 402
Target Start/End: Original strand, 2491521 - 2491607
Alignment:
Q  316 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacat 402  Q
    ||||| ||||| || || ||||| ||||||||||||||| ||||||| || |||||||||  ||||| || ||||||||||||||||    
T  2491521 gattccccaataccctcgcttttttctacttctaccgttattacacagacccaactttaccctcctactaatctcacaaatggacat 2491607  T

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Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 396
Target Start/End: Complemental strand, 9562566 - 9562505
Alignment:
Q  335 ttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaat 396  Q
    |||| ||||||||||||| ||||||||| ||||||||||||  |||||||| ||||||||||    
T  9562566 ttttttctacttctaccgctgttacacagacacaactttacgctcctaatattctcacaaat 9562505  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 394
Target Start/End: Complemental strand, 755250 - 755167
Alignment:
Q  311 tgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaa 394  Q
    |||| ||||| |||||||| ||  |||| ||||||||||| ||| ||||||| ||||||||||||  ||| |||||| ||||||    
T  755250 tgtgtgattccccaatcccatccattttttctacttctactgtttttacacagacacaactttaccctcccaatactatcacaa 755167  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 7398994 - 7398891
Alignment:
Q  107 ctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttc 206  Q
    ||||||| || ||||||||| | ||||||||||||||||| || |||||  | ||| | || ||||||||| | |||||||| |||||| | ||||| ||    
T  7398994 ctcttccattagatctcctgtcagagattctgtgtaggctcccagtgaagcttctccttcaacttcgatgcctctgtaagttcttcaatacccttatctc 7398895  T
Q  207 tgat 210  Q
    ||||    
T  7398894 tgat 7398891  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 679967 - 679906
Alignment:
Q  169 cttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagca 230  Q
    ||||||||| | |||||||||||  ||||||||||| ||||||| |  ||||||||||||||    
T  679967 cttcgatgcctctgtaagtttttttattctcttattgctgatccaacattcgcaaagaagca 679906  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 2455076 - 2455181
Alignment:
Q  107 ctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttc 206  Q
    ||||||| || |||||| || | || ||||||||  ||||||| ||||| |||||||| |||||||| ||| | || ||||  || ||||||||||| ||    
T  2455076 ctcttccattcgatctcgtggcggaaattctgtgccggcttcctgtgaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctcttatatc 2455175  T
Q  207 tgatcc 212  Q
    ||||||    
T  2455176 tgatcc 2455181  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 2476115 - 2476159
Alignment:
Q  340 tctacttctaccgttgttacacaaacacaactttacattcctaat 384  Q
    |||||||| |||||||||||||| ||||||||||||  |||||||    
T  2476115 tctacttcaaccgttgttacacagacacaactttaccctcctaat 2476159  T

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Target: scaffold0097 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 33 - 270
Target Start/End: Original strand, 33827 - 34064
Alignment:
Q  33 ggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcctgag 132  Q
    |||||||||||| ||||| || |||||||||||| ||||||||||||||| |||||||   |||||||||||| ||||||||||||||||| | ||||||    
T  33827 ggaaacaaccaatactcaaagacagcgattggccaccggaaccctaacatacccaccg---ccggagcttccaactcttccttttgatctcatacctgag 33923  T
Q  133 attctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagca-- 230  Q
    ||||| |||||||||||||| ||||||||| |||| || |||||| | |||||||| ||  ||||| | || || ||||| |||||||||||||| ||      
T  33924 attctatgtaggcttccggtcaaattactcatacaactccgatgcctctgtaagttctttgattctttgatctcagatcccaatttcgcaaagaaacacc 34023  T
Q  231 -tcgtatgtcaaccaagcgccaccacctcatgctaacaaat 270  Q
     || |||||||||||||| ||||||||||||| ||||||||    
T  34024 ttcatatgtcaaccaagcaccaccacctcatgttaacaaat 34064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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