View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4494_high_3 (Length: 250)
Name: NF4494_high_3
Description: NF4494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4494_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 43070624 - 43070393
Alignment:
| Q |
16 |
aatagattgatacttaattttaaaagcaatggtagtttagaagaaaataattaatgtgtgctgtaaagnnnnnnnnn-cacaatcacatgagttagtgat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43070624 |
aatagattgatacttaattttaaaagcaatggtagtttagaagaaaaaaattaatgtgtgctgtaaagaaaaaaaaaacacaatcacatgagttagtgat |
43070525 |
T |
|
| Q |
115 |
catgtcttnnnnnnnnnn----------gcccttatgtctctaaaacatgtatctctttgtcttttgtcttgatccgttaatgatttaagactcaagaac |
204 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
43070524 |
catgtcttaaaaaaactttaaaaaaaaagcccttatgtctctaaaacatgtatctctttgtcttttgtctgcatccgttaatgattaaagactcaagaac |
43070425 |
T |
|
| Q |
205 |
aagaattaattaaagcatggatgagtctatct |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43070424 |
aagaattaattaaagcatggatgagtctatct |
43070393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University