View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4495-Insertion-1 (Length: 1040)
Name: NF4495-Insertion-1
Description: NF4495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4495-Insertion-1 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 865; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 865; E-Value: 0
Query Start/End: Original strand, 32 - 1040
Target Start/End: Original strand, 26976513 - 26977529
Alignment:
| Q |
32 |
ttaggataagggataatggatataaccgataacagataagttaatggattgaaactgtagtgtttttattttctttttcttacgggatgacggnnnnnnn |
131 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26976513 |
ttaggatagcggataatggatataaccgataacagataagttaatggattgaaattgtagtgtttttattttctttttcttacgggatgacggttttttt |
26976612 |
T |
|
| Q |
132 |
nattcctcttttcttattggatagaaaatattgatgaatatctatttgtaaactgatagttggcattcaactttgagtgtttagttccacattggctgat |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26976613 |
tattcctcttttcttattggatagaaaatattgatgaatatctatttgtaaactgatagttggcattcaactttgagtgtttagtcccacattggctgat |
26976712 |
T |
|
| Q |
232 |
aatgagctaaattaatgatatagaagagaggtgactcatatgtctaatgttctaaggtgtggaaatgtggtgttttagtcttttgttgttgctccctatt |
331 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26976713 |
aatgagctaaattaatgatatagaagagaggcgactcatatgtctaatgttctaaggtgtggaaatgtggtgttttagtcttttgctgttgctccctatt |
26976812 |
T |
|
| Q |
332 |
ctttacggactctccaacaagtggtatttcggccgtgttaacttgatggaagaatgagatgggttcttgcatcaaaagtctttctggtagtggagtaagg |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26976813 |
ctttacggactctccaacaagtggtatttcggccgtgttaacttgatgggagaatgagatgggttcttgcatcaaaagtctttctggtagtggagtaagg |
26976912 |
T |
|
| Q |
432 |
tggcgtgctttgttggatggtattgatgatgcaagtataatgatgtgcaagactc----ataactggtaaatgaagattatataagagatataagagatg |
527 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
26976913 |
tggcgtgctttgttggatggtattgatgatgcaagtataatgatgtgcaagactcatagataactagtaaatgaagattatataagagatataagagatg |
26977012 |
T |
|
| Q |
528 |
tgatctatgtacacccaacaatgacaaaagcggaggataatatataagagaaatgtatgatcaggtgcatctgcatgcattcatacaataaaataagacg |
627 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26977013 |
tgatctatgtacactcaacaatgacaaaagcggaggataatatataagagaaatgtatgatcaggtgcatctgcatgcattcatacaataaaataagacg |
26977112 |
T |
|
| Q |
628 |
gaaaaccatcaaacttttggatattattgtta---ttatgtatcacattcatgtctttatatgcacacagaacttttaggatttacttccctgcttttca |
724 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26977113 |
gaaaaccatcaaacttttggatattattgttattgttatgtatcacattcatgtctttatatgcacacagaacttttaggatttacttccctgcttttca |
26977212 |
T |
|
| Q |
725 |
tgagtaaatatgtttgtgtaggatagggaggaagtgcagcatcacatatctgtcttgcttttcattggattagtatgtggcttggtgatgctactgttca |
824 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26977213 |
tgagtaaatatgtttgtgtaggatagggaggaagtgcagcatcacatatctgtcttgcttttcattggattagtatgtggcttggtgatgctactgttca |
26977312 |
T |
|
| Q |
825 |
caatgttatttggtgcgacaacgctcgcaggtattgaaaataagagctctgcccagttgtgtccctttttatgggataacagtaattcactgaggcataa |
924 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
26977313 |
caatgttatttggtgcaacaacgctcgcaggtattgaaaataagagctctgcccagttgtgtccc-ttttatgggataacagtaattcactaaggcataa |
26977411 |
T |
|
| Q |
925 |
atggtaaaaagagcctacccatgactgatg-attgttc-atttatgccttttgcagc-tttact-gaccggcaaatgtacatttagtacctgcagctaat |
1020 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26977412 |
atggt-aaaagagcctacccatgactgatgaattgttcaatttatgccttttgcagcttttactggaccggcaaatgtacatttagtacctgcagctaat |
26977510 |
T |
|
| Q |
1021 |
acttattgtccaggtatttt |
1040 |
Q |
| |
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||||| |||||||||||||| |
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| T |
26977511 |
actta-tgtccaggtatttt |
26977529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 684 - 1040
Target Start/End: Complemental strand, 26990479 - 26990121
Alignment:
| Q |
684 |
tatgcacacagaacttttaggatttacttccctgcttttcatgagtaaatatgtttgtgtaggatagggaggaagtgcagcatcacatatctgtcttgct |
783 |
Q |
| |
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|||||||||| ||||||||||||||| | | | || ||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26990479 |
tatgcacacataacttttaggatttattgcaccgcctttgcttagttaatatgtctgtgtaggatagggaggaagtgcagcatcacatatctgtcttgct |
26990380 |
T |
|
| Q |
784 |
tttcattggattagtatgtggcttggtgatgctactgttcacaatgttatttggtgcgacaacgctcgcaggtattgaaaataagagctctgcccagttg |
883 |
Q |
| |
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||| || || |||| |||||||| || |||||| | ||||||| |||||| || || ||||||| ||||||||||||||| ||||||||| ||||||| |
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|
| T |
26990379 |
ttttatcgggttagcatgtggctcggcgatgctttttttcacaaggttattaggcgcagcaacgctagcaggtattgaaaatgagagctctgtccagttg |
26990280 |
T |
|
| Q |
884 |
tgtccctttttatgggataacagtaattcactgaggcataaatggtaaaaagagccta-cccatgactgatg-attgttc-atttatgccttttgcagc- |
979 |
Q |
| |
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||||||||||| |||||||| ||||||||||| | ||||||||||| || |||||||| ||||||||||||| ||||||| |||||||||||||||||| |
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| T |
26990279 |
tgtcccttttt-tgggataatagtaattcactaatgcataaatggt-aatagagcctaccccatgactgatgaattgttcaatttatgccttttgcagct |
26990182 |
T |
|
| Q |
980 |
tttact-gaccggcaaatgtacatttagtacctgcagctaatacttattgtccaggtatttt |
1040 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
26990181 |
tttactggaccgaagaatgtacatttagtacctgcagctaatactta-tgtccaggtttttt |
26990121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 660 - 863
Target Start/End: Complemental strand, 27005041 - 27004840
Alignment:
| Q |
660 |
ttatgtatcacattcatgtctttatatgcacacagaacttttaggatttacttccctgcttttcatgagtaaatatgtttgtgtaggatagggaggaagt |
759 |
Q |
| |
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||||||||||||| |||| |||||| || |||||||||||||||||||| | | |||| ||| || ||| || ||||||||||||||||||||||||| |
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|
| T |
27005041 |
ttatgtatcacatccatgactttat--gcgcacagaacttttaggatttattgcactgcctttgattagtttatttgtttgtgtaggatagggaggaagt |
27004944 |
T |
|
| Q |
760 |
gcagcatcacatatctgtcttgcttttcattggattagtatgtggcttggtgatgctactgttcacaatgttatttggtgcgacaacgctcgcaggtatt |
859 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||| | ||||||| |||||||||||| |||||||||||||||||| |
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| T |
27004943 |
gcagcatcacatatctgtcttgctttttattgggttagcatgtggcttggcgatgctttttttcacaaggttatttggtgcaacaacgctcgcaggtatt |
27004844 |
T |
|
| Q |
860 |
gaaa |
863 |
Q |
| |
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|||| |
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| T |
27004843 |
gaaa |
27004840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 147 - 321
Target Start/End: Complemental strand, 27005598 - 27005419
Alignment:
| Q |
147 |
attggatagaaaatattgatgaatatctatttgtaaactgatagttggcattcaactttgagtgtttagttccacattggctgataatgagctaaattaa |
246 |
Q |
| |
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|||||| ||||||||||||||||||| |||||| ||| | ||| | | |||||| | |||||| ||||| |||| | | ||| |||| |||||| ||| |
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|
| T |
27005598 |
attggaaagaaaatattgatgaatatgcatttgtgaacgggtagcttgtattcaaatgtgagtggttagtctcacactagttgagaatgggctaaactaa |
27005499 |
T |
|
| Q |
247 |
tgatatagaagagaggtgactcatatgtctaatgttctaaggt-----gtggaaatgtggtgttttagtcttttgttgtt |
321 |
Q |
| |
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||||||||||||||| ||| ||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| |
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| T |
27005498 |
tgatatagaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtggtgtttcagtcttttgttgtt |
27005419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 734 - 865
Target Start/End: Complemental strand, 26945439 - 26945308
Alignment:
| Q |
734 |
atgtttgtgtaggatagggaggaagtgcagcatcacatatctgtcttgcttttcattggattagtatgtggcttggtgatgctactgttcacaatgttat |
833 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||||||||||||||| |||| || | |||||||| ||||||| |||||||| | ||| |
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| T |
26945439 |
atgtttgtgtaggatacagaagaagtgcagcatcacatatctgtcttgctttttgttgggttggcttgtggcttcatgatgcttttgttcacatggctat |
26945340 |
T |
|
| Q |
834 |
ttggtgcgacaacgctcgcaggtattgaaaat |
865 |
Q |
| |
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||||||| | || ||| | |||||||||||| |
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| T |
26945339 |
ttggtgctgccacactcactggtattgaaaat |
26945308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 727 - 866
Target Start/End: Complemental strand, 26953168 - 26953028
Alignment:
| Q |
727 |
agtaaatatgttt-gtgtaggatagggaggaagtgcagcatcacatatctgtcttgcttttcattggattagtatgtggcttggtgatgctactgttcac |
825 |
Q |
| |
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||||||||||||| || |||||||| ||||| |||||||||||| | ||| || ||||||| ||||| || | |||||||||| ||||||| ||| || |
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| T |
26953168 |
agtaaatatgttttgtataggatagagaggatgtgcagcatcacttgtctatcctgctttttattgggttggcatgtggcttgatgatgcttttgtctac |
26953069 |
T |
|
| Q |
826 |
aatgttatttggtgcgacaacgctcgcaggtattgaaaata |
866 |
Q |
| |
|
|| |||||| ||||| |||| || || ||||||||||||| |
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| T |
26953068 |
aaagttattcggtgcagcaacacttgccggtattgaaaata |
26953028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 532 - 570
Target Start/End: Complemental strand, 27005173 - 27005135
Alignment:
| Q |
532 |
ctatgtacacccaacaatgacaaaagcggaggataatat |
570 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||||| |
|
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| T |
27005173 |
ctatatacacccaacaatgacagaagcggaggataatat |
27005135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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