View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4495-Insertion-3 (Length: 913)
Name: NF4495-Insertion-3
Description: NF4495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4495-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 535 - 856
Target Start/End: Complemental strand, 41313604 - 41313278
Alignment:
| Q |
535 |
gaaggaattggtcaaattattgttatgttgcaagtagtggtgtggattgatccagctttccttctattgattgttannnnnnnnnngtcatgcattagga |
634 |
Q |
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| T |
41313604 |
gaaggaattggtcaaattattgttatgttgcaagtagtggtgtggattgatccagctttccttctattgattgttattttttttttgtcatgcattagga |
41313505 |
T |
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| Q |
635 |
ttgttacttatctactttaatagatttgggcttgctccatttttacatcctatttattaaaattgcacatttgannnnnnnnnnnnnnn--atatactat |
732 |
Q |
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| T |
41313504 |
ttgttacttatctactttaatagatttgggcttgttccatttttacatcctatttattaaaattgcacatttgattttttattttatttttatatactat |
41313405 |
T |
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| Q |
733 |
tctaatcaattttagtcatttttaattgataaattagattgacatattttcttattgaattttaagac--agacaactcagcatgtgtttgttttggcat |
830 |
Q |
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| T |
41313404 |
tctaatcaattttagtcatttttaattgataaattagattgacatattttcttattgaattttaagacaaagacaactcagcatgtgtttgttttggcat |
41313305 |
T |
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| Q |
831 |
tg-aaatacacgtttagcatcttttta |
856 |
Q |
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| T |
41313304 |
tgaaaattcacgtttagcatcttttta |
41313278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 117 - 445
Target Start/End: Complemental strand, 41313971 - 41313646
Alignment:
| Q |
117 |
tggttatggttatggttagtgggcctatgttgggcttacgtttccttaagacccaagcaagaggagtgaatgaaacaaacaaaaaatatacgaactaatt |
216 |
Q |
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| T |
41313971 |
tggttatggttatggttagtgggcctatgttgggcttacgtttccttaagacccaagcaagaggagtaaatgaaacaaacaaaaaagataccaactaatt |
41313872 |
T |
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| Q |
217 |
cactgttctagacttgtagattttt------catagttaccatgtcgcgcattaattg-attgtacatagtatcttgtcttacaaattttttgggcgata |
309 |
Q |
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| T |
41313871 |
cactgttctagacttgtagatttttctcgcgcattaatattatgattcaaattgattgtactatacatagtatcttgtcttgcaaattttttgggcgata |
41313772 |
T |
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| Q |
310 |
tttgtggtttgggataatagtttaataacttgtatacaccctttaacacttatgtttggtgatgatatcattcttttcaactactttttctctatatcta |
409 |
Q |
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| T |
41313771 |
tttgtggtttgggataatagtttaataactt---------atttaacac-tatgtttggtgatcatatcattcttttgaactactttttctctatatcta |
41313682 |
T |
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| Q |
410 |
accaaatttcataaaactaaagatttctccttaacc |
445 |
Q |
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| T |
41313681 |
accaaatttcataaaactaaagatttctccttaacc |
41313646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 134
Target Start/End: Complemental strand, 41313990 - 41313960
Alignment:
| Q |
104 |
atgtcaacagatctggttatggttatggtta |
134 |
Q |
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| T |
41313990 |
atgtcaacagatctggttatggttatggtta |
41313960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 41314055 - 41314026
Alignment:
| Q |
59 |
tgtgacatgtggcatgagcagagagtaaaa |
88 |
Q |
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| T |
41314055 |
tgtgacatgtggcatgagcagagagtaaaa |
41314026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 853 - 900
Target Start/End: Original strand, 46623901 - 46623950
Alignment:
| Q |
853 |
tttatagagaaatgatatttgaac-actattttttac-acttttgtgaca |
900 |
Q |
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| T |
46623901 |
tttatagagaaatgatatttgaacaaccattttttacaacttttgtgaca |
46623950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 854 - 900
Target Start/End: Original strand, 26910198 - 26910245
Alignment:
| Q |
854 |
ttatagagaaatgatatttgaacactattttttac-acttttgtgaca |
900 |
Q |
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| T |
26910198 |
ttatagagaaatgatatttgaaaaccattttttacaacttttgtgaca |
26910245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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