View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4495-Insertion-4 (Length: 671)

Name: NF4495-Insertion-4
Description: NF4495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4495-Insertion-4
NF4495-Insertion-4
[»] chr7 (13 HSPs)
chr7 (13-628)||(15746129-15746733)
chr7 (167-310)||(17335488-17335631)
chr7 (123-318)||(44212985-44213180)
chr7 (582-630)||(13931851-13931899)
chr7 (451-573)||(44212751-44212874)
chr7 (445-626)||(13926222-13926393)
chr7 (555-629)||(8942944-8943018)
chr7 (582-625)||(26336616-26336659)
chr7 (581-621)||(15736786-15736826)
chr7 (581-630)||(19794395-19794444)
chr7 (170-274)||(38657236-38657341)
chr7 (585-621)||(12962681-12962717)
chr7 (581-629)||(38319288-38319336)
[»] chr6 (13 HSPs)
chr6 (13-628)||(1569578-1570182)
chr6 (4-315)||(7656626-7656927)
chr6 (123-310)||(34957342-34957529)
chr6 (171-315)||(7672784-7672928)
chr6 (167-310)||(24026153-24026296)
chr6 (445-628)||(12591227-12591412)
chr6 (4-87)||(7672636-7672719)
chr6 (427-603)||(7673042-7673220)
chr6 (427-628)||(7656310-7656512)
chr6 (427-628)||(34957036-34957234)
chr6 (581-621)||(1579549-1579589)
chr6 (582-628)||(2197030-2197076)
chr6 (581-628)||(35176248-35176295)
[»] chr5 (5 HSPs)
chr5 (4-628)||(11240472-11241089)
chr5 (167-310)||(22278730-22278873)
chr5 (582-621)||(11233286-11233325)
chr5 (581-628)||(14947486-14947533)
chr5 (582-628)||(22292799-22292845)
[»] chr8 (8 HSPs)
chr8 (4-510)||(129593-130080)
chr8 (455-629)||(45482965-45483139)
chr8 (135-284)||(34905558-34905706)
chr8 (582-631)||(32057262-32057311)
chr8 (581-630)||(34909104-34909153)
chr8 (582-628)||(130131-130177)
chr8 (582-628)||(9866132-9866178)
chr8 (170-211)||(34905213-34905254)
[»] chr3 (6 HSPs)
chr3 (4-432)||(11759084-11759503)
chr3 (185-320)||(51847153-51847288)
chr3 (555-628)||(41523558-41523631)
chr3 (555-628)||(52616499-52616572)
chr3 (582-629)||(11758855-11758902)
chr3 (581-621)||(51859027-51859067)
[»] chr4 (11 HSPs)
chr4 (70-439)||(36230242-36230602)
chr4 (129-284)||(13738918-13739072)
chr4 (129-274)||(13736860-13737005)
chr4 (555-628)||(13736514-13736587)
chr4 (454-631)||(47335962-47336141)
chr4 (185-320)||(26888983-26889118)
chr4 (581-630)||(26885843-26885892)
chr4 (555-628)||(26889363-26889436)
chr4 (585-621)||(15067791-15067827)
chr4 (585-617)||(13744145-13744177)
chr4 (587-631)||(25611667-25611711)
[»] chr2 (8 HSPs)
chr2 (145-538)||(18457475-18457855)
chr2 (135-323)||(43881653-43881846)
chr2 (129-284)||(15572575-15572729)
chr2 (555-628)||(15573418-15573491)
chr2 (445-628)||(12524015-12524188)
chr2 (445-628)||(43881948-43882132)
chr2 (582-628)||(12521365-12521411)
chr2 (585-621)||(15570086-15570122)
[»] chr1 (4 HSPs)
chr1 (126-323)||(48735190-48735386)
chr1 (427-507)||(48735014-48735096)
chr1 (531-573)||(48734968-48735010)
chr1 (581-630)||(28032873-28032922)
[»] scaffold0604 (2 HSPs)
scaffold0604 (123-225)||(7643-7745)
scaffold0604 (451-549)||(7306-7404)
[»] scaffold0268 (1 HSPs)
scaffold0268 (582-630)||(19044-19092)


Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 628
Target Start/End: Original strand, 15746129 - 15746733
Alignment:
Q  13 ttcaatggtgaccaccttcttcaaaatgtatttcaagaataaaaactactactagtattcaacaaccttacatcataataaagaattaaatatgtttaac 112  Q
    |||||||||||||| ||| ||||||||| ||||||| ||| ||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  15746129 ttcaatggtgaccagcttgttcaaaatgcatttcaaaaatgaaaactactgctagtcttcaacaaccatacatcataataaacaattaaatatgtttaac 15746228  T
Q  113 aaattctctcatacataccttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaa 212  Q
    || ||||   |||||||||||||||||        |||||||||||| |  || ||  ||||||  ||||||||||||||||||||||||||||||||||    
T  15746229 aatttctt--atacataccttcaagtt--------tcagaaatcaaccaacagcttatatgaatccagatctagaaaccaaactaagttgcaatctccaa 15746318  T
Q  213 acttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggttgatagtgagtatcaatttctaaaaatat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||    
T  15746319 acttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcagtttctgaaaatat 15746418  T
Q  313 gaagaaaatggttgtagatgaaaatgattctttgtgagattcaagtgatgaaagagaggaagaactaagaagactcgcgtgagattcaaaatgggggttg 412  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  15746419 gaagaaaatggtggtagatgaaaatgattctttgtgagattcaagtgaaggaagagagaaagaactaagaagactcacgtgagattcaaaatggaggttg 15746518  T
Q  413 atggctagtaagtttgaattgctactctgcattttcactttggggggtgtttccagcaaaaacaataaaattaatattttc-attataatatgttttcct 511  Q
    |||| || |||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  15746519 atggttaataagtttgaattgctgttctgcattttcagttt-gggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttttcct 15746617  T
Q  512 tttattaatgatttattttcagcaggtaacctcaccccccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgt 611  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15746618 tttattaatgatttattttcagcaggtaatctc-tcccccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgt 15746716  T
Q  612 gcatgctaaatgccacc 628  Q
    |||||||||||||||||    
T  15746717 gcatgctaaatgccacc 15746733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 17335631 - 17335488
Alignment:
Q  167 tttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatt 266  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |  |||| || ||||||||||||| |||||| ||||| | |||| |||||||    
T  17335631 tttaataaatgtagatctagaaaccaaactaagttgcaatctccaaattgtaatgaaatgtgaaataaaattgaacaatgttgttgaggaagctgaaatt 17335532  T
Q  267 taagttaatgagtaggttgatagtgagtatcaatttctaaaaat 310  Q
    ||| ||||||  ||||||||| |||| || |||||||| |||||    
T  17335531 taacttaatgtttaggttgatggtgactaacaatttctgaaaat 17335488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 123 - 318
Target Start/End: Complemental strand, 44213180 - 44212985
Alignment:
Q  123 atacataccttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatgg 222  Q
    ||||||||||| ||||| ||||||||||||||||||| |  ||||||||| |||  ||||||| ||||||||||||| |||||| ||||||||||||| |    
T  44213180 atacatacctttaagtttaaagatttcagaaatcaaccaacagatttaataaatccagatctaaaaaccaaactaagatgcaatttccaaacttcaatag 44213081  T
Q  223 aaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggttgatagtgagtatcaatttctaaaaatatgaagaa 318  Q
    ||| |||||| | ||| |||||  ||||| | ||| || || |||||||||||| | | |||||| ||||||| | |||||| ||| | |||||||    
T  44213080 aaaatgaaatgatattgaacaactttgttgatgaatatcaattttaagttaatgtgaatgttgatggtgagtaaccatttctgaaattctgaagaa 44212985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 582 - 630
Target Start/End: Original strand, 13931851 - 13931899
Alignment:
Q  582 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccaccct 630  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13931851 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccaccct 13931899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 573
Target Start/End: Complemental strand, 44212874 - 44212751
Alignment:
Q  451 tttggggggtgtttccagcaaaaacaataaaattaata-ttttcattataatatgttttccttttattaatgatttattttcagcaggtaacctcacccc 549  Q
    ||||| |||||| || ||||||||||||||||  |||| |||||||||||||||||||| |||||||||||| |||||||| |||| || ||| ||||||    
T  44212874 tttggagggtgtatctagcaaaaacaataaaaccaatatttttcattataatatgtttt-cttttattaatggtttatttttagcaagtcaccccacccc 44212776  T
Q  550 -ccaaaaccgccagctgtccaaaaa 573  Q
     |||||||| ||| ||||| |||||    
T  44212775 accaaaacctccatctgtcaaaaaa 44212751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 445 - 626
Target Start/End: Complemental strand, 13926393 - 13926222
Alignment:
Q  445 tttcactttggggggtgtttccagcaaaaacaataaaattaatattt-tcattataatatgttttccttttattaatgatttattttcagcaggtaacct 543  Q
    ||||||||| || ||||| || |||||||||||||||   ||||||  ||| |||||||||||| |||||| |||||| |||||||| |||||||||||     
T  13926393 tttcacttttggtggtgtatctagcaaaaacaataaatgaaatattaatcaatataatatgttt-cctttttttaatgttttatttttagcaggtaacc- 13926296  T
Q  544 caccccccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgcca 626  Q
             ||||||||| ||||||| |||  | |   |||||||||||| ||||||||||| ||||||||||||||||||||    
T  13926295 ---------aaaccgccacctgtccagaaaagtgtaggttgtgcatggtgtacaaatctttctcttgtgcatgctaaatgcca 13926222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 629
Target Start/End: Complemental strand, 8943018 - 8942944
Alignment:
Q  555 accgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccaccc 629  Q
    ||||||| ||||||||||||||    ||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  8943018 accgccacctgtccaaaaatctaagacttgtgcatggtgcacaaatcttccccttgtgcaccctaaatgccaccc 8942944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 582 - 625
Target Start/End: Original strand, 26336616 - 26336659
Alignment:
Q  582 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgcc 625  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  26336616 ttgtgcatggtgcacaaatcttttccttgtgcatgctaaatgcc 26336659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 621
Target Start/End: Complemental strand, 15736826 - 15736786
Alignment:
Q  581 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaa 621  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  15736826 cttgtgcatggagcacaaatctttcccttgtgcatgctaaa 15736786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 19794444 - 19794395
Alignment:
Q  581 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccaccct 630  Q
    |||||||||||||||||||| | ||  |||||||||||||||||||||||    
T  19794444 cttgtgcatggtgcacaaatttatcaattgtgcatgctaaatgccaccct 19794395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 38657341 - 38657236
Alignment:
Q  170 aatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaat---ggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatt 266  Q
    ||||||| |||||||| ||||||||||||| ||||||||||| |  |||||   ||||| ||||||||  || |||||| ||||| | ||||| ||| ||    
T  38657341 aatgaatctagatctataaaccaaactaagctgcaatctccaga--tcaataaaggaaaatgaaataatgttgaacaattttgttgatgaagaagaactt 38657244  T
Q  267 taagttaa 274  Q
    ||||||||    
T  38657243 taagttaa 38657236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 621
Target Start/End: Original strand, 12962681 - 12962717
Alignment:
Q  585 tgcatggtgcacaaatctttcccttgtgcatgctaaa 621  Q
    |||||||||||||||||||| |||| |||||||||||    
T  12962681 tgcatggtgcacaaatcttttccttatgcatgctaaa 12962717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 629
Target Start/End: Original strand, 38319288 - 38319336
Alignment:
Q  581 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccaccc 629  Q
    ||||||||||| |||||||| | |  |||||||||||||||||||||||    
T  38319288 cttgtgcatggagcacaaatttatgtcttgtgcatgctaaatgccaccc 38319336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 628
Target Start/End: Complemental strand, 1570182 - 1569578
Alignment:
Q  13 ttcaatggtgaccaccttcttcaaaatgtatttcaagaataaaaactactactagtattcaacaaccttacatcataataaagaattaaatatgtttaac 112  Q
    |||||||||||||| ||| ||||||||| ||||||| ||| ||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  1570182 ttcaatggtgaccagcttgttcaaaatgcatttcaaaaatgaaaactactgctagtcttcaacaaccatacatcataataaacaattaaatatgtttaac 1570083  T
Q  113 aaattctctcatacataccttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaa 212  Q
    || ||||   |||||||||||||||||        |||||||||||| |  || ||  ||||||  ||||||||||||||||||||||||||||||||||    
T  1570082 aatttctt--atacataccttcaagtt--------tcagaaatcaaccaacagcttatatgaatccagatctagaaaccaaactaagttgcaatctccaa 1569993  T
Q  213 acttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggttgatagtgagtatcaatttctaaaaatat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||    
T  1569992 acttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcagtttctgaaaatat 1569893  T
Q  313 gaagaaaatggttgtagatgaaaatgattctttgtgagattcaagtgatgaaagagaggaagaactaagaagactcgcgtgagattcaaaatgggggttg 412  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  1569892 gaagaaaatggtggtagatgaaaatgattctttgtgagattcaagtgaaggaagagagaaagaactaagaagactcacgtgagattcaaaatggaggttg 1569793  T
Q  413 atggctagtaagtttgaattgctactctgcattttcactttggggggtgtttccagcaaaaacaataaaattaatattttc-attataatatgttttcct 511  Q
    |||| || |||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  1569792 atggttaataagtttgaattgctgttctgcattttcagttt-gggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttttcct 1569694  T
Q  512 tttattaatgatttattttcagcaggtaacctcaccccccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgt 611  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1569693 tttattaatgatttattttcagcaggtaatctc-tcccccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgt 1569595  T
Q  612 gcatgctaaatgccacc 628  Q
    |||||||||||||||||    
T  1569594 gcatgctaaatgccacc 1569578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 4 - 315
Target Start/End: Complemental strand, 7656927 - 7656626
Alignment:
Q  4 aacaaaaatttcaatggtgaccaccttcttcaaaatgtatttcaagaataaaaactactactagtattcaacaaccttacatcataataaagaattaaat 103  Q
    ||||| || |||||||||||||| ||| ||||||||| ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  7656927 aacaacaacttcaatggtgaccagcttgttcaaaatgcatttcaagaatgaaaattactactagtattcaacaaccatacatcataataaagaattaaat 7656828  T
Q  104 atgtttaacaaattctctcatacataccttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgc 203  Q
    ||||||||||||||||   |||||||||||||||||        ||| |||||||| |  |  ||  ||||||  |||||||||||||||||||||||||    
T  7656827 atgtttaacaaattctt--atacataccttcaagtt--------tcacaaatcaaccaacaacttctatgaatccagatctagaaaccaaactaagttgc 7656738  T
Q  204 aatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggttgatagtgagtatcaatttc 303  Q
    |||||||||||||||||||||||||||||| |||| |||||| || || ||||||||||||| |||||||||| ||||||| || ||||||| |||||||    
T  7656737 aatctccaaacttcaatggaaagtgaaatataattgaacaatgttattgaagaagatgaaatataagttaatgtgtaggttaatggtgagtaacaatttc 7656638  T
Q  304 taaaaatatgaa 315  Q
    | ||||| ||||    
T  7656637 tgaaaatctgaa 7656626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 123 - 310
Target Start/End: Complemental strand, 34957529 - 34957342
Alignment:
Q  123 atacataccttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatgg 222  Q
    ||||||| ||| ||||| ||||| | || |||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||     
T  34957529 atacatatctttaagtttaaagactgcataaatcaacaatgagatttaatgaatccaaatctagaaaccaaactaagttgcaatctccaaacttcaatga 34957430  T
Q  223 aaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggttgatagtgagtatcaatttctaaaaat 310  Q
    |||||||||||||||| ||||||  |||| ||||||| |||||||||||| ||| |||| ||||| ||||||| |||||||| |||||    
T  34957429 aaagtgaaataaaattgaacaatgctgttaaagaagacgaaatttaagttgatgggtagattgatggtgagtaacaatttctgaaaat 34957342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 171 - 315
Target Start/End: Original strand, 7672784 - 7672928
Alignment:
Q  171 atgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaag 270  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||| |  || ||||||||||||| ||||    
T  7672784 atgaattcagatctagaaaccaaactaagttgcaatctccaaacatcaatggaaagttaaatataattgaacaatgtcattgaagaagatgaaatataag 7672883  T
Q  271 ttaatgagtaggttgatagtgagtatcaatttctaaaaatatgaa 315  Q
    |||||| ||||||| || ||||||| |||||||| ||||| ||||    
T  7672884 ttaatgtgtaggttaatggtgagtaacaatttctgaaaatctgaa 7672928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 24026296 - 24026153
Alignment:
Q  167 tttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatt 266  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |  |||| || ||||||||||||| |||||| ||||| | |||| |||||||    
T  24026296 tttaataaatgtagatctagaaaccaaactaagttgcaatctccaaaatgtaatgaaatgtgaaataaaattgaacaatgttgttgaggaagctgaaatt 24026197  T
Q  267 taagttaatgagtaggttgatagtgagtatcaatttctaaaaat 310  Q
    ||| ||||||  ||||||||| |||| || |||||||| |||||    
T  24026196 taacttaatgtttaggttgatggtgactaacaatttctgaaaat 24026153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 445 - 628
Target Start/End: Complemental strand, 12591412 - 12591227
Alignment:
Q  445 tttcactttggggggtgtttccagcaaaaacaataaaa-ttaata-ttttcattataatatgttttccttttattaatgatttattttcagcaggtaacc 542  Q
    ||||||||| |||||||| |||||||||||||||||||   |||| |||||||||||||||| ||||||||||||| | ||||||||||||||||| |||    
T  12591412 tttcacttttgggggtgtatccagcaaaaacaataaaaccaaatatttttcattataatatg-tttccttttattatttatttattttcagcaggtcacc 12591314  T
Q  543 tcacccc-ccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
     |||||| ||||||| |||| ||||||| |||  | |   ||||||||||||||||||| || |  ||||||||  |||||||||||    
T  12591313 ccaccccaccaaaactgccacctgtccataaaagtgttgtttgtgcatggtgcacaaattttgcatttgtgcatattaaatgccacc 12591227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 7672636 - 7672719
Alignment:
Q  4 aacaaaaatttcaatggtgaccaccttcttcaaaatgtatttcaagaataaaaactactactagtattcaacaaccttacatca 87  Q
    ||||| || |||||||||||||| ||| ||||||||| ||||||||||| |||| |||||| |||||||||||||| |||||||    
T  7672636 aacaacaacttcaatggtgaccagcttgttcaaaatgcatttcaagaatgaaaattactaccagtattcaacaaccatacatca 7672719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 427 - 603
Target Start/End: Original strand, 7673042 - 7673220
Alignment:
Q  427 tgaattgctactctgcattttcac-tttggggggtgtttccagcaaaaacaataaaattaatattttc-attataatatgttttccttttattaatgatt 524  Q
    ||||||||| |||||||||||||  |||||||| ||| | |||||||||||||||||  ||||||||| |||| |||||| |||| |||||||| |||||    
T  7673042 tgaattgcttctctgcattttcagatttgggggatgtattcagcaaaaacaataaaaccaatattttctattaaaatatg-tttcattttattattgatt 7673140  T
Q  525 tattttcagcaggtaacctcacccc-ccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctt 603  Q
    || ||| || |||||| |  ||||| |||||||||||| || ||||||| | | |   ||| ||||||||||||||||||    
T  7673141 taattttagtaggtaatcaaaccccaccaaaaccgccacctatccaaaattttgtgggttgggcatggtgcacaaatctt 7673220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 427 - 628
Target Start/End: Complemental strand, 7656512 - 7656310
Alignment:
Q  427 tgaattgctactctgcattttcac-tttggggggtgtttccagcaaaaacaataaaattaatattttc-attataatatgttttccttttattaatgatt 524  Q
    |||||||||||| ||||||||||  |||| ||||||| |  ||||||||||||||||  ||||||||| |||| |||||| |||| |||||||| | |||    
T  7656512 tgaattgctactttgcattttcagatttgaggggtgtattaagcaaaaacaataaaaccaatattttctattaaaatatg-tttcattttattatttatt 7656414  T
Q  525 tattttcagcaggtaacctcaccccccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgc 624  Q
    || ||| || ||||||||  |||  ||||||| |||| ||||||| || | | |   ||| ||||||||||||||||||    |||||||| ||||||||    
T  7656413 taattttagtaggtaaccaaacctaccaaaactgccacctgtccagaattttctgggttgcgcatggtgcacaaatcttatatttgtgcattctaaatgc 7656314  T
Q  625 cacc 628  Q
    ||||    
T  7656313 cacc 7656310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 427 - 628
Target Start/End: Complemental strand, 34957234 - 34957036
Alignment:
Q  427 tgaattgctactctgcattttcactttggggggtgtttccagcaaaaacaataaaattaatattttcattataatatgttttccttttattaatgattta 526  Q
    |||||||||||||||| ||||||  || |  ||||| | |||||||||||||||||  |||| |||  ||| |||||| || | |||||||| |||||||    
T  34957234 tgaattgctactctgctttttcagatttgaaggtgtattcagcaaaaacaataaaaccaatacttt--tta-aatatggtt-cattttattattgattta 34957139  T
Q  527 ttttcagcaggtaacctcacccc-ccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgcc 625  Q
     ||| ||||||||| |  ||||| ||||||||||||  |||||| || | | |   ||||||||| ||||||||| |||||||| ||||| |||||||||    
T  34957138 attttagcaggtaatccaaccccaccaaaaccgccacttgtccagaattttatgggttgtgcatgctgcacaaatttttcccttatgcatactaaatgcc 34957039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 621
Target Start/End: Original strand, 1579549 - 1579589
Alignment:
Q  581 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaa 621  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  1579549 cttgtgcatggagcacaaatctttcccttgtgcatgctaaa 1579589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 582 - 628
Target Start/End: Original strand, 2197030 - 2197076
Alignment:
Q  582 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||||    
T  2197030 ttgtgcatggtgcacaaatctatcatttgtgcatgctaaatgccacc 2197076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 628
Target Start/End: Complemental strand, 35176295 - 35176248
Alignment:
Q  581 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    |||||||||||||||||||| | |  ||||||||||||||||||||||    
T  35176295 cttgtgcatggtgcacaaatttatatcttgtgcatgctaaatgccacc 35176248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 4 - 628
Target Start/End: Original strand, 11240472 - 11241089
Alignment:
Q  4 aacaaaaatttcaatggtgaccaccttcttcaaaatgtatttcaagaataaaaactactactagtattcaacaaccttacatcataataaagaattaaat 103  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11240472 aacaacaatttcaatggtgaccaccttcttcaaaatgcatttcaataatgaaaactactactagtattcaacaaccttacatcataataaagaattaaat 11240571  T
Q  104 atgtttaacaaattctctcatacataccttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgc 203  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||    
T  11240572 atgtttaacaaattctt--atacataccttcaagttcaaagatttcagaaatcaacaatgagattcaatgaatccagatctagaaaccaaactaagttgc 11240669  T
Q  204 aatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggttgatagtgagtatcaatttc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11240670 aatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaaaaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttc 11240769  T
Q  304 taaaaatatgaagaaaatggttgtagatgaaaatgattctttgtgagattcaagtgatgaaagagaggaagaactaagaagactcgcgtgagattcaaaa 403  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||        |||||||||| ||||||||||||||    
T  11240770 tgaaaatatgaagaaaatggtggtagatgaaaatgattctttgtgagattcaagtgaaggaagagag-------aaagaagactcacgtgagattcaaaa 11240862  T
Q  404 tgggggttgatggctagtaagtttgaattgctactctgcattttc-actttggggggtgtttccagcaaaaacaataaaattaatatttt-cattataat 501  Q
    ||||||||||||| |||||||| |||||||||||||||||||| | | ||| |||||||| | |||||||||||||||||  |||||||| |||||||||    
T  11240863 tgggggttgatggttagtaagtgtgaattgctactctgcatttccaaatttcgggggtgtcttcagcaaaaacaataaaaccaatattttccattataat 11240962  T
Q  502 atgttttccttttattaatgatttatttt--cagcaggtaacctcaccccccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaa 599  Q
    ||| |||||||||||||||||||| ||||   ||||||||| || |    |||||||||||||||||||| | || | |   ||||||||||||||||||    
T  11240963 atg-tttccttttattaatgatttttttttgtagcaggtaatct-aaagaccaaaaccgccagctgtccatatatttgttgtttgtgcatggtgcacaaa 11241060  T
Q  600 tctttcccttgtgcatgctaaatgccacc 628  Q
    |||||   ||||| ||| |||||||||||    
T  11241061 tctttgtgttgtgtatgttaaatgccacc 11241089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 22278730 - 22278873
Alignment:
Q  167 tttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatt 266  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||| ||||| | |||| |||||||    
T  22278730 tttaataaatgtagatctagaaaccaaactaagttgcaatctccaaactgcaatgaaatgtgaaataaaattgaacaatgttgttgaggaagctgaaatt 22278829  T
Q  267 taagttaatgagtaggttgatagtgagtatcaatttctaaaaat 310  Q
    ||| ||||||  ||||||||| |||| || |||||||| |||||    
T  22278830 taacttaatgtttaggttgatggtgactaacaatttctgaaaat 22278873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 621
Target Start/End: Complemental strand, 11233325 - 11233286
Alignment:
Q  582 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaa 621  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  11233325 ttgtgcacggagcacaaatctttcccttgtgcatgctaaa 11233286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 628
Target Start/End: Original strand, 14947486 - 14947533
Alignment:
Q  581 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    |||||||||||||||||||| ||   ||||||||||||||||||||||    
T  14947486 cttgtgcatggtgcacaaattttatacttgtgcatgctaaatgccacc 14947533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 628
Target Start/End: Original strand, 22292799 - 22292845
Alignment:
Q  582 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    ||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  22292799 ttgtgcatggtgcacaaatctatcatttgtgcatactaaatgccacc 22292845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 307; Significance: 1e-172; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 4 - 510
Target Start/End: Original strand, 129593 - 130080
Alignment:
Q  4 aacaaaaatttcaatggtgaccaccttcttcaaaatgtatttcaagaataaaaactactactagtattcaacaaccttacatcataataaagaattaaat 103  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  129593 aacaacaatttcaatggtgaccaccttcttctaaatgcatttcaataatgaaaactactactagtattcaacaaccttacatcataataaagaattaaat 129692  T
Q  104 atgtttaacaaattctctcatacataccttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgc 203  Q
    |||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||    
T  129693 atgtttaacagat--tcttatacataccttcaagttcaaagatttcagaaatcaacaatgagattcaatgaatccagatctagaaaccaaactaagttgc 129790  T
Q  204 aatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggttgatagtgagtatcaatttc 303  Q
    ||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||     
T  129791 aatctccaaacttc------------aataaaatttaacaatcttgttcaagaagatgaaatttaagtttatgggtaggttgatagcgagtatcaattta 129878  T
Q  304 taaaaatatgaagaaaatggttgtagatgaaaatgattctttgtgagattcaagtgatgaaagagaggaagaactaagaagactcgcgtgagattcaaaa 403  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||        |||||||||| ||||||||||||||    
T  129879 tgaaaatatgaagaaaatggtggtagatgaaaatgattctttgtgagattcaagtgaaggaagagag-------aaagaagactcacgtgagattcaaaa 129971  T
Q  404 tgggggttgatggctagtaagtttgaattgctactctgcattttca-ctttggggggtgtttccagcaaaaacaataaaattaatattttc-attataat 501  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||  ||| ||||||||  ||||||||||||||||||| ||||||||| ||||||||    
T  129972 tgggggttgatggttagtaagtgtgaattgctactctgcattttcagattttgggggtgtcaccagcaaaaacaataaaatcaatattttcaattataat 130071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 455 - 629
Target Start/End: Original strand, 45482965 - 45483139
Alignment:
Q  455 gggggtgtttccagcaaaaacaataaaattaatatttt-cattataatatgttttccttttattaatgatttattttcagcaggtaacctcaccccccaa 553  Q
    |||||||| ||||| |||||||||||||  |||||||| ||||||||||||||| |||||||||| | ||||||||||||||||| ||| |||| || ||    
T  45482965 gggggtgtatccagaaaaaacaataaaaccaatatttttcattataatatgttt-ccttttattatttatttattttcagcaggtcaccacacctcctaa 45483063  T
Q  554 aaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccaccc 629  Q
    ||| |||| |||| |||||||||||| ||||||  ||||||||||||||| ||||||||||  |||||||||||||    
T  45483064 aactgccacctgttcaaaaatctttcacttgtgtttggtgcacaaatcttccccttgtgcaccctaaatgccaccc 45483139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 135 - 284
Target Start/End: Complemental strand, 34905706 - 34905558
Alignment:
Q  135 aagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatggaaagtgaaataa 234  Q
    ||||| ||||||||||||||||||| | ||||||||||||||  ||||||| |||||| |||||| |||||||||||||||||||  |||| ||||||||    
T  34905706 aagttgaaagatttcagaaatcaaccaagagatttaatgaatccagatctataaaccacactaagctgcaatctccaaacttcaaaagaaaatgaaataa 34905607  T
Q  235 aatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggtt 284  Q
     ||| |||||| ||||| | ||||| | |||||||||||||| |||||||    
T  34905606 tattgaacaattttgttgatgaagaag-aatttaagttaatgggtaggtt 34905558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 582 - 631
Target Start/End: Complemental strand, 32057311 - 32057262
Alignment:
Q  582 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacccta 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32057311 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacccta 32057262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 581 - 630
Target Start/End: Original strand, 34909104 - 34909153
Alignment:
Q  581 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccaccct 630  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||    
T  34909104 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaaccccaccct 34909153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 582 - 628
Target Start/End: Original strand, 130131 - 130177
Alignment:
Q  582 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||||    
T  130131 ttgtgcatggtgcacaaatctatcatttgtgcatgctaaatgccacc 130177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 582 - 628
Target Start/End: Complemental strand, 9866178 - 9866132
Alignment:
Q  582 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||||    
T  9866178 ttgtgcatggtgcacaaatctatcatttgtgcatgctaaatgccacc 9866132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 34905254 - 34905213
Alignment:
Q  170 aatgaatttagatctagaaaccaaactaagttgcaatctcca 211  Q
    ||||||| |||||||| ||||||||||||| |||||||||||    
T  34905254 aatgaatctagatctataaaccaaactaagctgcaatctcca 34905213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 4 - 432
Target Start/End: Complemental strand, 11759503 - 11759084
Alignment:
Q  4 aacaaaaatttcaatggtgaccaccttcttcaaaatgtatttcaagaataaaaactactactagtattcaacaaccttacatcataataaagaattaaat 103  Q
    ||||| ||||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11759503 aacaacaatttaaatggtgaccaccttcttcaaaatgcatttcaataatgaaaactactactagtattcaaaaaccttacatcataataaagaattaaat 11759404  T
Q  104 atgtttaacaaattctctcatacataccttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgc 203  Q
    || |||||||||||||   |||||||||||||||||| |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||     
T  11759403 atttttaacaaattctt--atacataccttcaagttcgaagatttcagaaatcagcaatgagatttaatgaatccagatctagaaaccaaactaagttga 11759306  T
Q  204 aatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggttgatagtgagtatcaatttc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11759305 aatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaaaaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttc 11759206  T
Q  304 taaaaatatgaagaaaatggttgtagatgaaaatgattctttgtgagattcaagtgatgaaagagaggaagaactaagaagactcgcgtgagattcaaaa 403  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||        |||||||||| ||||||||||||||    
T  11759205 tgaaaatatgaagaaaatggtggtagatgaaaatgattctttgtgagattcaagtgaaggaagagag-------aaagaagactcacgtgagattcaaaa 11759113  T
Q  404 tgggggttgatggctagtaagtttgaatt 432  Q
    ||||||| ||||| || ||||||||||||    
T  11759112 tgggggtcgatggttattaagtttgaatt 11759084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 185 - 320
Target Start/End: Complemental strand, 51847288 - 51847153
Alignment:
Q  185 agaaaccaaactaagttgcaatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggtt 284  Q
    ||||| ||||||||| |||||||| |||||||||| ||||| |||||||| ||| |||| | ||||| | ||||| ||| |||||||||||| |||||||    
T  51847288 agaaatcaaactaagctgcaatcttcaaacttcaaaggaaaatgaaataatattgaacagttttgttgatgaagaagaactttaagttaatgggtaggtt 51847189  T
Q  285 gatagtgagtatcaatttctaaaaatatgaagaaaa 320  Q
    | | ||||| ||  ||||||  |||| |||||||||    
T  51847188 gttggtgagaatgcatttctggaaatctgaagaaaa 51847153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 555 - 628
Target Start/End: Original strand, 41523558 - 41523631
Alignment:
Q  555 accgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||||||  |||||||||  ||||||||||||    
T  41523558 accgccagctgtccaaaaatcgttcacttgtgcatggtacacaaatcttctccttgtgcaccctaaatgccacc 41523631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 555 - 628
Target Start/End: Original strand, 52616499 - 52616572
Alignment:
Q  555 accgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||||| ||||||||||  ||||||||||||    
T  52616499 accgccacctgtccaaaaatctaagccttgtgcatggtgcacaaatcttccccttgtgcaccctaaatgccacc 52616572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 582 - 629
Target Start/End: Complemental strand, 11758902 - 11758855
Alignment:
Q  582 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccaccc 629  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11758902 ttgtgcatggtgcacaaatcttttccttgtgcatgctaaatgccaccc 11758855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 581 - 621
Target Start/End: Original strand, 51859027 - 51859067
Alignment:
Q  581 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaa 621  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  51859027 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaa 51859067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 70 - 439
Target Start/End: Original strand, 36230242 - 36230602
Alignment:
Q  70 ttcaacaaccttacatcataataaagaattaaatatgtttaacaaattctctcatacataccttcaagttcaaagatttcagaaatcaacaatgagattt 169  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||   ||| ||||||||||||| |||||||||||||||||||||||||||||    
T  36230242 ttcaacaaccttacatcataataaataattaaatatgtttaacaaattctt--atatataccttcaagtttaaagatttcagaaatcaacaatgagattt 36230339  T
Q  170 aatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaa 269  Q
     ||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36230340 catgaattcagatctagaaaccaaactaagttgcaatctccaaactttaacggaaagtgaaataaaatttaacaatcttgttcaagaagatggaatttaa 36230439  T
Q  270 gttaatgagtaggttgatagtgagtatcaatttctaaaaatatgaagaaaatggttgtagatgaaaatgattctttgtgagattcaagtgatgaaagaga 369  Q
    ||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||    
T  36230440 gttaatgggtaggttgatagtgagtatcaatttatgaaaatatgaagaaaatggtggtagatgaaaacgattctttgtgagattcaagtgaaggaagaga 36230539  T
Q  370 ggaagaactaagaagactcgcgtgagattcaaaatgggggttgatggctagtaagtttgaattgctactc 439  Q
    |        |||||||||| ||||||||||| |||||||||||||| || ||||||||||||| ||||||    
T  36230540 g-------aaagaagactcacgtgagattcagaatgggggttgatgactggtaagtttgaattactactc 36230602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 129 - 284
Target Start/End: Complemental strand, 13739072 - 13738918
Alignment:
Q  129 accttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatggaaagtg 228  Q
    ||||| ||||| ||||||||||||||||||| | ||||||||||||||  |||||||  ||||| |||||| |||||||||||||||||||  |||| ||    
T  13739072 acctttaagttgaaagatttcagaaatcaaccaagagatttaatgaatccagatctatgaaccacactaagctgcaatctccaaacttcaaaagaaaatg 13738973  T
Q  229 aaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggtt 284  Q
    |||||| ||| |||||| ||||| | ||||| | |||||||||||||| |||||||    
T  13738972 aaataatattgaacaattttgttgatgaagaag-aatttaagttaatgggtaggtt 13738918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 129 - 274
Target Start/End: Complemental strand, 13737005 - 13736860
Alignment:
Q  129 accttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatggaaagtg 228  Q
    ||||| ||||| ||||||||||||||||||| | ||||||||||||||  |||||||  ||||| |||||| |||||||||||||||||||  |||| ||    
T  13737005 acctttaagttgaaagatttcagaaatcaaccaagagatttaatgaatccagatctatgaaccacactaagctgcaatctccaaacttcaaaagaaaatg 13736906  T
Q  229 aaataaaatttaacaatcttgttcaagaagatgaaatttaagttaa 274  Q
    |||||| ||| |||||| ||||| | ||||| ||| ||||||||||    
T  13736905 aaataatattgaacaattttgttgatgaagaagaactttaagttaa 13736860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 555 - 628
Target Start/End: Complemental strand, 13736587 - 13736514
Alignment:
Q  555 accgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||  ||||||||||||    
T  13736587 accgctagctgtccaaaaatctttcacttgtgcatggtgcacaaatcttccctttgtgcaccctaaatgccacc 13736514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 454 - 631
Target Start/End: Complemental strand, 47336141 - 47335962
Alignment:
Q  454 ggggggtgtttccagcaaaaacaataaaattaa-tattttc-attataatatgttttccttttattaatgatttattttcagcaggtaacctcacccc-c 550  Q
    |||||||||  ||| ||||||||||||||  || ||||||| |||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||| |    
T  47336141 ggggggtgtaaccaccaaaaacaataaaaccaaatattttccattataatatgttttc-ttttattatttatttattttcagcaggtcaccccaccccac 47336043  T
Q  551 caaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacccta 631  Q
    |||||| | || | ||||| |||  | |   |||||||||||||||||||| | |  |||||||| | |||||||||||||    
T  47336042 caaaactgtcaccagtccataaaagtgttgtttgtgcatggtgcacaaatcatgcatttgtgcataccaaatgccacccta 47335962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 320
Target Start/End: Original strand, 26888983 - 26889118
Alignment:
Q  185 agaaaccaaactaagttgcaatctccaaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggtt 284  Q
    ||||| ||||||||| ||||||||||||||||||| ||||| |||||||| ||| |||| | ||||| | |||||  || ||||| |||||| |||||||    
T  26888983 agaaatcaaactaagctgcaatctccaaacttcaaaggaaaatgaaataatattgaacagttttgttgatgaagaaaaactttaaattaatgggtaggtt 26889082  T
Q  285 gatagtgagtatcaatttctaaaaatatgaagaaaa 320  Q
    | | ||||| ||  ||||||  |||| |||||||||    
T  26889083 gttggtgagaatgcatttctggaaatctgaagaaaa 26889118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 26885892 - 26885843
Alignment:
Q  581 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccaccct 630  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||    
T  26885892 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaaccccaccct 26885843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 628
Target Start/End: Original strand, 26889363 - 26889436
Alignment:
Q  555 accgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    ||||||| || |||||||||||    ||||||||||||||||||||||| ||||||||||  ||||||||||||    
T  26889363 accgccacctatccaaaaatctaagacttgtgcatggtgcacaaatcttccccttgtgcaccctaaatgccacc 26889436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 621
Target Start/End: Complemental strand, 15067827 - 15067791
Alignment:
Q  585 tgcatggtgcacaaatctttcccttgtgcatgctaaa 621  Q
    ||||| |||||||||||||||||||||||||||||||    
T  15067827 tgcatcgtgcacaaatctttcccttgtgcatgctaaa 15067791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 617
Target Start/End: Original strand, 13744145 - 13744177
Alignment:
Q  585 tgcatggtgcacaaatctttcccttgtgcatgc 617  Q
    |||||||||||||||||||||||||| ||||||    
T  13744145 tgcatggtgcacaaatctttcccttgagcatgc 13744177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 631
Target Start/End: Complemental strand, 25611711 - 25611667
Alignment:
Q  587 catggtgcacaaatctttcccttgtgcatgctaaatgccacccta 631  Q
    |||||||||||||| || | ||||||||| |||||||||||||||    
T  25611711 catggtgcacaaattttacacttgtgcatactaaatgccacccta 25611667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 9e-38; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 145 - 538
Target Start/End: Original strand, 18457475 - 18457855
Alignment:
Q  145 atttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatggaaagtgaaataaaatttaacaa 244  Q
    ||||||||||||||| |  || || |||||||  |||||||||||| |||||    |||||||||||||||||||||||||||||||||||||  |||||    
T  18457475 atttcagaaatcaaccaacagcttcaatgaatccagatctagaaactaaact----tgcaatctccaaacttcaatggaaagtgaaataaaatggaacaa 18457570  T
Q  245 tcttgttcaagaagatgaaatttaagttaatgagtaggttgatagtgagtatcaatttctaaaaatatgaagaaaatggttgtagatgaaaatgattctt 344  Q
    | ||||| |||||||||||| ||||||||||| | |||||||| ||||||| |||||||| ||||| |||| || ||||  |   ||||| ||| ||||     
T  18457571 ttttgttgaagaagatgaaaattaagttaatgtg-aggttgatggtgagtaacaatttctgaaaatctgaacaacatggggggcaatgaagatgcttcta 18457669  T
Q  345 tgtgagattcaagtgatgaaagagaggaagaactaagaagactcgcgtgagattcaaaatgggggttgatggctagtaagtttgaattgctactctgcat 444  Q
    |||||||||||||||| | |  |||||||     ||| ||| |   ||||||||||| ||| |    ||   |  || ||| ||||||||| ||||||||    
T  18457670 tgtgagattcaagtgaagga--agaggaa----aaaggagattgaagtgagattcaagatgtgcagcga---cgtgttagtgtgaattgcttctctgcat 18457760  T
Q  445 tttc-actttggggggtgtttccagcaaaaacaataaaattaatattt-tcattataatatgttttccttttattaatgatttattttcagcaggt 538  Q
    ||||   |||| ||||||| | |||||||||||||||||  ||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  18457761 tttcggatttgaggggtgtatacagcaaaaacaataaaaccaatatttctcattataatatgtttt-cttttattaattatttatttttagcaggt 18457855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 135 - 323
Target Start/End: Original strand, 43881653 - 43881846
Alignment:
Q  135 aagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatgg-----aaagtga 229  Q
    ||||| ||||||||||||||||||| |  ||||||||| |||  ||||||||||| |||||| || ||||||||||||||||||||||     ||| | |    
T  43881653 aagtttaaagatttcagaaatcaaccaacagatttaataaatccagatctagaaatcaaactgagatgcaatctccaaacttcaatggaaaataaaataa 43881752  T
Q  230 aataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggttgatagtgagtatcaatttctaaaaatatgaagaaaatgg 323  Q
    ||||||||| || ||  ||||| | |||||| ||||||||||||||| |||||||||| |||||||  ||||||| ||||||||||||| ||||    
T  43881753 aataaaattgaaaaagtttgttgatgaagatcaaatttaagttaatgggtaggttgatggtgagtaaaaatttctgaaaatatgaagaacatgg 43881846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 129 - 284
Target Start/End: Original strand, 15572575 - 15572729
Alignment:
Q  129 accttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatggaaagtg 228  Q
    ||||| ||||| ||||||||||||||||||| | ||||||||||||||  |||||||  ||||| |||||| |||||||||||||||||||  |||| ||    
T  15572575 acctttaagttgaaagatttcagaaatcaaccaagagatttaatgaatccagatctatgaaccacactaagctgcaatctccaaacttcaaaagaaaatg 15572674  T
Q  229 aaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggtt 284  Q
    |||||| ||| |||||| ||||| | ||||| | |||||||||||||| |||||||    
T  15572675 aaataatattgaacaattttgttgatgaagaag-aatttaagttaatgggtaggtt 15572729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 555 - 628
Target Start/End: Original strand, 15573418 - 15573491
Alignment:
Q  555 accgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  15573418 accgccaactgtccaaaaatctttcacttgtgcatggtgcacaaatcttccccttgtgcatcctaaatgccacc 15573491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 445 - 628
Target Start/End: Original strand, 12524015 - 12524188
Alignment:
Q  445 tttcactttggggggtgtttccagcaaaaacaataaaattaatattt-tcattataatatgttttccttttattaatgatttattttcagcaggtaacct 543  Q
    ||||||||| || ||||| || |||||||||||||||   ||||||  ||| |||||||||||| |||||| |||||| |||||||| |||||||||||     
T  12524015 tttcacttttggtggtgtatctagcaaaaacaataaatgaaatattaatcaatataatatgttt-cctttttttaatgttttatttttagcaggtaacc- 12524112  T
Q  544 caccccccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
             ||||||||| ||||||| |||  | |   |||||||||||||||||||||||| |||||||||||||||| |||||    
T  12524113 ---------aaaccgccacctgtccagaaaagtgtaggttgtgcatggtgcacaaatctttctcttgtgcatgctaaataccacc 12524188  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 445 - 628
Target Start/End: Original strand, 43881948 - 43882132
Alignment:
Q  445 tttcactttggggggtgtttccagcaaaaacaataaaattaatattttc-attataatatgttttccttttattaatgatttattttcagcaggtaacct 543  Q
    ||||| ||| |||||||| ||||| |||| ||||| ||  ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| |  |    
T  43881948 tttcagttttgggggtgtatccagtaaaagcaatataaccaatattttccattataatatgttt-ccttttattaatggtttattttcagcaggtcaaat 43882046  T
Q  544 cac-cccccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
     || ||| |||||| |||| ||||||| |||| | |   ||| ||||| ||||||||||||    |||||||| ||||||||||||    
T  43882047 aacacccacaaaactgccacctgtccagaaatttgtggtttgggcatgatgcacaaatcttatatttgtgcattctaaatgccacc 43882132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 582 - 628
Target Start/End: Complemental strand, 12521411 - 12521365
Alignment:
Q  582 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 628  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  12521411 ttgtgcatgatgcacaaatctttcccttgtgcatgctaaatgccacc 12521365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 621
Target Start/End: Complemental strand, 15570122 - 15570086
Alignment:
Q  585 tgcatggtgcacaaatctttcccttgtgcatgctaaa 621  Q
    |||||||||||||||||||||||||||||||||||||    
T  15570122 tgcatggtgcacaaatctttcccttgtgcatgctaaa 15570086  T

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Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 126 - 323
Target Start/End: Complemental strand, 48735386 - 48735190
Alignment:
Q  126 cataccttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatggaaa 225  Q
    |||||||| ||||| |||||||||| |||||||| |  ||| ||||| |||  ||||||||||| |||||| || |||||||||||||||||||||||||    
T  48735386 catacctttaagtttaaagatttcataaatcaaccaacagagttaataaatccagatctagaaatcaaactgagatgcaatctccaaacttcaatggaaa 48735287  T
Q  226 gtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgagtaggttgatagtgagtatcaatttctaaaaatatgaagaaaatgg 323  Q
     | |||||||||| || ||  ||||| | |||||| ||||||||||||||| |||||||||| |||||||  |||||||  |||||||||||| ||||    
T  48735286 ataaaataaaattgaa-aagtttgttgatgaagatcaaatttaagttaatgggtaggttgatggtgagtaaaaatttctggaaatatgaagaacatgg 48735190  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 427 - 507
Target Start/End: Complemental strand, 48735096 - 48735014
Alignment:
Q  427 tgaattgctactctgcattttcactttggg-gggtgtttccagcaaaaacaataaaattaatatttt-cattataatatgttt 507  Q
    ||||||||||||||||||||||| ||| || ||||||  ||||||||||||||||||  |||||||| |||||||||||||||    
T  48735096 tgaattgctactctgcattttcagttttggagggtgtcaccagcaaaaacaataaaaccaatattttccattataatatgttt 48735014  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 573
Target Start/End: Complemental strand, 48735010 - 48734968
Alignment:
Q  531 cagcaggtaacctcaccccccaaaaccgccagctgtccaaaaa 573  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  48735010 cagcaggtaaccccaccccccaaaaccgccacctgtccaaaaa 48734968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 28032922 - 28032873
Alignment:
Q  581 cttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccaccct 630  Q
    |||||||||||||||||||||||    |||||||| ||||||||||||||    
T  28032922 cttgtgcatggtgcacaaatcttatatttgtgcattctaaatgccaccct 28032873  T

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Target: scaffold0604 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 7745 - 7643
Alignment:
Q  123 atacataccttcaagttcaaagatttcagaaatcaacaatgagatttaatgaatttagatctagaaaccaaactaagttgcaatctccaaacttcaatgg 222  Q
    ||||||||||||||||| |||||||||||||||| || |  |  || |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  7745 atacataccttcaagtttaaagatttcagaaatctaccaacatcttcaatgaattcagatctacaaaccaaactaagatgcaatctccaaacttcaatgg 7646  T
Q  223 aaa 225  Q
    |||    
T  7645 aaa 7643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 451 - 549
Target Start/End: Complemental strand, 7404 - 7306
Alignment:
Q  451 tttggggggtgtttccagcaaaaacaataaaattaatatttt-cattataatatgttttccttttattaatgatttattttcagcaggtaacctcacccc 549  Q
    |||||||||||| |||||||||||||||||||  |||||||| |||||||||||| ||||||||||||| | ||||||||||||||||| ||| ||||||    
T  7404 tttggggggtgtatccagcaaaaacaataaaaccaatattttccattataatatg-tttccttttattatttatttattttcagcaggtcaccccacccc 7306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 630
Target Start/End: Original strand, 19044 - 19092
Alignment:
Q  582 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccaccct 630  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  19044 ttgtgcatggtgcacaaatctatcatttgtgcatgctaaatgccaccct 19092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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