View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4495-Insertion-6 (Length: 311)
Name: NF4495-Insertion-6
Description: NF4495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4495-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 43742560 - 43742256
Alignment:
| Q |
7 |
aatgatttatcttgtatttctaacccgatcaaacacatgtgtagtatatctcaaagaacttattttagataacaataataatttaaacaattaatcttat |
106 |
Q |
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| T |
43742560 |
aatgatttatcttgtatttctaacccgatcaaacacacgtgtagtatatctcaaagaacttattttagataacaataataatttaaacaattaatcttat |
43742461 |
T |
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| Q |
107 |
acagtgaaattagcttaaaataataatttacgtattttagctnnnnnnnnntcattgtataggttttaatacttttctttttccatattcaattaagaga |
206 |
Q |
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| T |
43742460 |
acaattaaattagcttaaaagaataaattacgtattttagctaaaaaaaaatcattgtataggttttaatacttttctttttccatattcaattaagaga |
43742361 |
T |
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| Q |
207 |
agctctataatcctctttttgaacaaaggagttctataatccataacgggaggggaaagacttataacaagatccaaaggaatgtttcctttcttgttta |
306 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43742360 |
agctctataatcctctttttgaacaaagaagttctataatccataacgggaggggaaagacttataacaagatccaaaggaatgtttcctttcttgttta |
43742261 |
T |
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| Q |
307 |
tcaat |
311 |
Q |
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||||| |
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| T |
43742260 |
tcaat |
43742256 |
T |
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