View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4495_high_2 (Length: 434)
Name: NF4495_high_2
Description: NF4495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4495_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 129180 - 129602
Alignment:
| Q |
1 |
tctgatagttgtataggaatgtggagtggtggactttgcttcttcttgacgaatgctggagtaagcattagcaatatactcttccagttcccttgggaca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
129180 |
tctgatagttgtataggaatgtggagtggtggactttgcttcttcttgacgaatgttggagtaagcattagcaatatactcttccagttcccctgggaca |
129279 |
T |
|
| Q |
101 |
gtaggagacaatcttctaacagttgatatgtatgcactacaggaaaacaacacggtttagtttgtagtaacttctttctagcaaatggtagaacatttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| | |
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| T |
129280 |
gtaggagacaatcttctaacagttgatatgtatgcactacaggaaaacaacacagtttaatttgtagtaacttctttctagcaaatgatagaacatttca |
129379 |
T |
|
| Q |
201 |
cacagaccctatgtgatactatttgaacagtcagacccaatgtcagtaactagcgcacgaccgtgccaatatatagcacgaccgtgcatcaataagtttc |
300 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
129380 |
cacagaccctatgtgaaactatttgagcagtcagacccaatgtcagtaactagcgcacgaccatgccaatatatagcacgaccgtgcgtcaataagtttc |
129479 |
T |
|
| Q |
301 |
aagcttcgggtcgaatcttccagtgcagacggacatggccgtgtcataattgagcacgaccgtgcgtt-----agaacaagaaatcgaaaaacgaacatg |
395 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |
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| T |
129480 |
aagcttcgggtcgaatcttccagtacagacggacatgaccgtgtcataattgagcacgaccgtgcgttactgaagaacaacaaatcgaaaaacgaaaatg |
129579 |
T |
|
| Q |
396 |
gaaaaacactcaagaacaaaaatt |
419 |
Q |
| |
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| | | ||||||||||||| |||| |
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| T |
129580 |
g-agagcactcaagaacaacaatt |
129602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 44773712 - 44773946
Alignment:
| Q |
1 |
tctgatagttgtataggaatgtggagtggtggactttgcttcttcttgacgaatgctggagtaagcattagcaatatactcttccagttcccttgggaca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44773712 |
tctgatagttgtataggaatgtggagtggtggactttgcttcttcttgacgaatgctggagtaagcactagcaatatactcttccagttcccttgggaca |
44773811 |
T |
|
| Q |
101 |
gtaggagacaatcttctaacagttgatatgtatgcactacaggaaaacaacacggtttagtttgtagtaacttctttctagcaaatggtagaacatttga |
200 |
Q |
| |
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|| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| || ||||||||||| |
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| T |
44773812 |
gttggagacaatcttctagcagttgatatgtatgcactacaggaaagcaacacggtttagtttctagcaacttctttctagcaagtgacagaacatttga |
44773911 |
T |
|
| Q |
201 |
cacagaccctatgtgatactatttgaacagtcaga |
235 |
Q |
| |
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|||||||||||||||| ||||| ||| |||||||| |
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| T |
44773912 |
cacagaccctatgtgaaactatatgagcagtcaga |
44773946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 238 - 419
Target Start/End: Original strand, 11240296 - 11240481
Alignment:
| Q |
238 |
caatgtcagtaactagcgcacgaccgtgccaatatatagcacgaccgtgcatcaataagtttcaagcttcgggtcgaatcttccagtgcagacggacatg |
337 |
Q |
| |
|
||||| |||||| |||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||| |||||||||||||||||| ||| | |
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| T |
11240296 |
caatgccagtaattagcacacgaccgtgccaatatatagcacgatcgcgcgtcaataagtttcaagcttcgggtcaaatcttccagtgcagacgaacacg |
11240395 |
T |
|
| Q |
338 |
gccgtgtcataattgagcacgaccgtgcgtt-----agaacaagaaatcgaaaaacgaacatggaaaaacactcaagaacaaaaatt |
419 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||| |||| |
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| T |
11240396 |
gtcgtgtcataattgagcacgaccgtgcgttactgaagaacaacaaatcgaaaaacgaacatgg-agaacactcaagaacaacaatt |
11240481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 238 - 419
Target Start/End: Complemental strand, 11759679 - 11759494
Alignment:
| Q |
238 |
caatgtcagtaactagcgcacgaccgtgccaatatatagcacgaccgtgcatcaataagtttcaagcttcgggtcgaatcttccagtgcagacggacatg |
337 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| | || ||| | |
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| T |
11759679 |
caatgtcagcaactagcgcacgaccgtgccaatatataggacgattgtgcgtcaataagtttcaagcttcgggtcgaatcttccagtggaaacaaacacg |
11759580 |
T |
|
| Q |
338 |
gccgtgtcataattgagcacgaccgtgcgtt-----agaacaagaaatcgaaaaacgaacatggaaaaacactcaagaacaaaaatt |
419 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||| | ||||||||||||||| |||| |
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| T |
11759579 |
gccgtgtcataattgagcacgaccgggcgttactgaagaacaacaaatcgaaagacgaacatgg-agaacactcaagaacaacaatt |
11759494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 7672464 - 7672509
Alignment:
| Q |
241 |
tgtcagtaactagcgcacgaccgtgccaatatatagcacgaccgtg |
286 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
7672464 |
tgtcagtaactagcgcacgaccgcgccaatataatgcacgaccgtg |
7672509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 7657102 - 7657054
Alignment:
| Q |
238 |
caatgtcagtaactagcgcacgaccgtgccaatatatagcacgaccgtg |
286 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| |||||| |||| |
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|
| T |
7657102 |
caatgtcagaaactagcgcacgaccgcgccaatataatgcacgatcgtg |
7657054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 18457296 - 18457351
Alignment:
| Q |
314 |
aatcttccagtgcagacggacatggccgtgtcataattgagcacgaccgtgcgtta |
369 |
Q |
| |
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|||||||||||||| || |||||||| ||||| ||||| |||||||||||||||| |
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| T |
18457296 |
aatcttccagtgcaaaccaacatggccatgtcaaaattgcgcacgaccgtgcgtta |
18457351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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