View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4495_high_5 (Length: 333)
Name: NF4495_high_5
Description: NF4495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4495_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 69 - 324
Target Start/End: Complemental strand, 9721183 - 9720926
Alignment:
| Q |
69 |
gtggaagtaaacgccccaccaaataactttaaagtctttagctatgtttgttagtgcattgcaattactaatatgaacggttctcactattttctttcct |
168 |
Q |
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| T |
9721183 |
gtggaaataaacgccccagcaataaactttaaagtctttagctatgtttgttagtgcattgcagttactaatgtgaacagttctcactattttctttcct |
9721084 |
T |
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| Q |
169 |
ttcagaatactcatacttcattattgtactct--attcttactattttgagtcaccaaatgacaactttttcataaagtttatgataatgtttagcctaa |
266 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9721083 |
ttcagaatactctaacttcattattgtactctctattcttactattttgagtcaccaaatgacaactttttcataaagtttatgataatgtttagcctaa |
9720984 |
T |
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| Q |
267 |
aatgttatattcaaacaacatagagttttgtacctgactcgaaatatgatgtctctgc |
324 |
Q |
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| T |
9720983 |
aatgttatattcaaacaacatagagttttgtacctgactcgaaatatgatgtctctgc |
9720926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 6804165 - 6804049
Alignment:
| Q |
15 |
atgcaaatagattgatatcaatcgcaatgaaattgtaaggtattttcnnnnnnngtggaagtaaacgccccaccaaataactttaaagtctttagctatg |
114 |
Q |
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| T |
6804165 |
atgcaaatagattgagatcaatcacaatgaaattgtaagatgctttcaaaaagagtggaagtaaatgccccaccaataaacttta--gtctttagctgtg |
6804068 |
T |
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| Q |
115 |
tttgttagtgcattgcaat |
133 |
Q |
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| T |
6804067 |
tttgttagtgcattacaat |
6804049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 7602944 - 7603055
Alignment:
| Q |
94 |
actttaaagtctttagctatgtttgttagtgcattgcaattactaatatgaacggttctcactattttctttcctttcaga-----atactcatacttca |
188 |
Q |
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|||||||||||||||||| ||||||||||||| || || | |||||| ||||||||||||| |||||||||||| |||||||| ||||| |
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| T |
7602944 |
actttaaagtctttagctgtgtttgttagtgc-------ttgatattgtgaacgattctcactattttgtttcctttcagaatactatactcatgcttca |
7603036 |
T |
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| Q |
189 |
ttattgtactctattctta |
207 |
Q |
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||||||||||||||||||| |
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| T |
7603037 |
ttattgtactctattctta |
7603055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 6753599 - 6753521
Alignment:
| Q |
69 |
gtggaagtaaacgccccaccaaataactttaaagtctttagctatgtttgttagtgcattgcaattactaatatgaacg |
147 |
Q |
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||||||||||| |||||||||| |||||||||||||||| || ||||||||||||| | ||| | |||| |||||||| |
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| T |
6753599 |
gtggaagtaaatgccccaccaataaactttaaagtctttaactgtgtttgttagtgcttggcagtgactattatgaacg |
6753521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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