View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4495_low_1 (Length: 568)

Name: NF4495_low_1
Description: NF4495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4495_low_1
NF4495_low_1
[»] chr3 (11 HSPs)
chr3 (13-553)||(26752453-26752993)
chr3 (168-351)||(26700265-26700448)
chr3 (62-373)||(26677070-26677381)
chr3 (62-373)||(26688709-26689020)
chr3 (196-373)||(26745690-26745867)
chr3 (196-343)||(26692995-26693142)
chr3 (196-373)||(26715416-26715592)
chr3 (186-319)||(26738709-26738842)
chr3 (253-319)||(26735454-26735520)
chr3 (54-130)||(26700486-26700562)
chr3 (255-324)||(47191918-47191987)
[»] chr7 (1 HSPs)
chr7 (255-331)||(21106707-21106783)


Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 13 - 553
Target Start/End: Complemental strand, 26752993 - 26752453
Alignment:
Q  13 tcatcacaccccccaagattccaacaatgtccccttcaccatcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatcctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26752993 tcatcacaccccccaagattccaacaatgtccccttcaccatcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatcctt 26752894  T
Q  113 caccctctcagtagaaaaccctgaacaaaacatcatactttcccccnnnnnnnccttcacagcaggtttctaccctgtaggacaaaatgcttattccttt 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  26752893 caccctctcagtagaaaaccctgaacaaaacatcatactctcccccaaaaaaaccttcacagcaggtttctaccctgtaggacaaaatgcttattccttt 26752794  T
Q  213 gccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacacttt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  26752793 gccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaaccagttaatggaaaacgctcaacacttt 26752694  T
Q  313 cccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccactgaaaccacctcaacaaaaccacttgaactactattaca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26752693 cccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccactgaaaccacctcaacaaaaccacttgaactactattaca 26752594  T
Q  413 ggaaacaggtaaccttgttcttcaagaacaaagcagaaatggttcaagaaaaaacaatattctatggcaaagttttgacttcccaacagatacactttta 512  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26752593 tgaaacaggtaaccttgttcttcaagaacaaagcagaaatggttcaagaaaaaacaatattctatggcaaagttttgacttcccaacagatacactttta 26752494  T
Q  513 cccgaccaaaccttaacgaggttcacgaacctcgtttcatc 553  Q
    || ||||||||| ||||||||||||||||||||||||||||    
T  26752493 cctgaccaaaccctaacgaggttcacgaacctcgtttcatc 26752453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 168 - 351
Target Start/End: Complemental strand, 26700448 - 26700265
Alignment:
Q  168 ttcacagcaggtttctaccctgtaggacaaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttgga 267  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||     
T  26700448 ttcacagcaggtttctaccctgttggagaaaatgcttattcctttgctatatggttcacccaaaaacacaaaaatctcaacaacgctaccgttgtttggg 26700349  T
Q  268 tggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcag 351  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||| || ||||| |||||||    
T  26700348 tggcaaatcgtgaccaaccagttaacggaaaacgctcaacactttcccttcttaaaaccggcaaccttgtattaaccgatgcag 26700265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 62 - 373
Target Start/End: Complemental strand, 26677381 - 26677070
Alignment:
Q  62 cttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaaccctgaacaaaacatcatactttcccccnnn 161  Q
    |||||| ||||||||||||||  ||||||||||||||||  | ||||| ||| |||||||||| ||||| || |||||| |||| ||| | || |||       
T  26677381 cttcttcacttttctcatcttgttcttccattttcaacattcatcatcattctccctctcagtggaaaaacccgaacaagacattataatgtcacccaaa 26677282  T
Q  162 nnnnccttcacagcaggtttctaccctgtaggacaaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattg 261  Q
        | || || ||||| || ||  | || ||  ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||  |||    
T  26677281 ggtacatttaccgcaggcttttattccgtcggtgaaaatgcttattcctttgccatatggttcactcaaatacacaaaaatctaaacaacgctactgttg 26677182  T
Q  262 tttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccat 361  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||  || ||||     
T  26677181 tttggatggcaaatcgtgaccaaccagttaacggaaaacgctcaacactttcccttctcaaaaccggcaacctcgtcttaaccgatgcaggacattccaa 26677082  T
Q  362 tgtttggtccac 373  Q
    ||| ||||||||    
T  26677081 tgtatggtccac 26677070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 62 - 373
Target Start/End: Original strand, 26688709 - 26689020
Alignment:
Q  62 cttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaaccctgaacaaaacatcatactttcccccnnn 161  Q
    |||||| ||||||||||||||  ||||||||||||||||  | ||||| ||| |||||||||| ||||| || |||||| |||| ||| | || |||       
T  26688709 cttcttcacttttctcatcttgttcttccattttcaacattcatcatcattctccctctcagtggaaaaacccgaacaagacattataatgtcacccaaa 26688808  T
Q  162 nnnnccttcacagcaggtttctaccctgtaggacaaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattg 261  Q
        | || || ||||| || ||  | || ||  ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||  |||    
T  26688809 ggtacatttaccgcaggcttttattccgtcggtgaaaatgcttattcctttgccatatggttcactcaaatacacaaaaatctaaacaacgctactgttg 26688908  T
Q  262 tttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccat 361  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||  || ||||     
T  26688909 tttggatggcaaatcgtgaccaaccagttaacggaaaacgctcaacactttcccttctcaaaaccggcaacctcgtcttaaccgatgcaggacattccaa 26689008  T
Q  362 tgtttggtccac 373  Q
    ||| ||||||||    
T  26689009 tgtatggtccac 26689020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 196 - 373
Target Start/End: Complemental strand, 26745867 - 26745690
Alignment:
Q  196 aaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaacctgttaacgg 295  Q
    ||||||||||||| || |||||||||||||| |||||||||||||| ||   |||  ||||| ||||||||||||| |||||||||||||||||||||||    
T  26745867 aaaatgcttattcattcgccatatggttcactcaaaaacacaaaaacctttccaatcctaccgttgtttggatggctaatcgtgaccaacctgttaacgg 26745768  T
Q  296 aaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccac 373  Q
    ||||||||||||||||||||||||||||||||| |||||| | ||||| || ||||  |||| ||  |||||||||||    
T  26745767 aaaacgctcaacactttcccttctcaaaactggcaacctcattttaaccgacgcaggacagttcaacgtttggtccac 26745690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 196 - 343
Target Start/End: Original strand, 26692995 - 26693142
Alignment:
Q  196 aaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaacctgttaacgg 295  Q
    ||||||||||||| || |||||||||||||| |||||||||||||| |||  |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  26692995 aaaatgcttattcattcgccatatggttcactcaaaaacacaaaaacctcgccaacgctaccgttgtttggatggcaaatcgtgaccaacctgttaacgg 26693094  T
Q  296 aaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaac 343  Q
    |||| |||||| |||||||||||||||||| || ||||| || |||||    
T  26693095 aaaatgctcaagactttcccttctcaaaaccgggaaccttgtattaac 26693142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 196 - 373
Target Start/End: Complemental strand, 26715592 - 26715416
Alignment:
Q  196 aaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaacctgttaacgg 295  Q
    ||||||||||||| || |||||||||||||| |||||||||||||| |||| |||  ||||| |||||||||||||||||||||||||||| ||||||||    
T  26715592 aaaatgcttattcattcgccatatggttcactcaaaaacacaaaaacctcaccaatgctaccgttgtttggatggcaaatcgtgaccaaccagttaacgg 26715493  T
Q  296 aaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccac 373  Q
     |||||||| |||||||||||||| || || || |||||| | ||||| || ||||  ||||  | ||||||||||||    
T  26715492 -aaacgctcgacactttcccttcttaataccggcaacctcattttaaccgacgcaggacagtttaatgtttggtccac 26715416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 186 - 319
Target Start/End: Complemental strand, 26738842 - 26738709
Alignment:
Q  186 cctgtaggacaaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaac 285  Q
    ||||||||  ||||||||||||| || |||||||||||||| |||||||||||||| |||| |||  ||||| |||||||||||||||||||||| || |    
T  26738842 cctgtaggcgaaaatgcttattcattcgccatatggttcactcaaaaacacaaaaacctcaccaatgctaccgttgtttggatggcaaatcgtgaacagc 26738743  T
Q  286 ctgttaacggaaaacgctcaacactttcccttct 319  Q
    | || |||||||||||||| ||||||||||||||    
T  26738742 cagtaaacggaaaacgctcgacactttcccttct 26738709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 26735520 - 26735454
Alignment:
Q  253 ctaccattgtttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttct 319  Q
    ||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  26735520 ctaccgttgtttggatggcaaatcgtgatcaaccagttaatggaaaacgctcaacactttcccttct 26735454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 26700562 - 26700486
Alignment:
Q  54 tcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaa 130  Q
    ||||||||||| || ||| |||||||||| ||||||| |||||| ||| | ||||| ||| |||||||||| |||||    
T  26700562 tcaccaatcttgttcactattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaa 26700486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 47191918 - 47191987
Alignment:
Q  255 accattgtttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaa 324  Q
    ||||||||||||||||| ||  | ||||||||||||||||| |||| ||||| ||| || ||| ||||||    
T  47191918 accattgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaa 47191987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 21106707 - 21106783
Alignment:
Q  255 accattgtttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggaaa 331  Q
    |||||| |||||||||||||||| |||||||| || || |||||||| || | |||| ||||| | || ||||||||    
T  21106707 accattatttggatggcaaatcgcgaccaacccgtgaatggaaaacgatccaaacttacccttttaaacactggaaa 21106783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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