View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4495_low_2 (Length: 480)
Name: NF4495_low_2
Description: NF4495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4495_low_2 |
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| [»] scaffold0330 (2 HSPs) |
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| [»] scaffold0240 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 153 - 461
Target Start/End: Complemental strand, 2004220 - 2003913
Alignment:
| Q |
153 |
atgctgatttcaccacaattttaataagctatatatttaagcttcacactaaacacacggttgcgttcacaccacggtgaaccaaacaccgacttaacca |
252 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
2004220 |
atgctgatttcaccacaattttaataagttatatatttaagcttcacactaaacacacggttgcgttcacaccaccgtgaaccaaacaccggcttaacca |
2004121 |
T |
|
| Q |
253 |
tttaatgtaaagttcgatctttcatatatgcataaggaaacattagaaaaatcatataatatattcacgactcattcaatttctcttatatgaaatttat |
352 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
2004120 |
tttaatgtaaagttcgatctttcacatatgcataaggagatattagaaaaatcatataatatattcatgactcattcaatttctcttataagaaagttat |
2004021 |
T |
|
| Q |
353 |
ggtgtaaaatatatatttggattcttgtacccacacataaaatcatttgaattgattgagacttagtagtatattgctaataaaatcacatagtttctaa |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
2004020 |
ggtgtaaaatatatatttggattcttgtacccacacataaaatcatttgaattgattgaga-tttgtagtatattgctaataaaatcacatagtttctaa |
2003922 |
T |
|
| Q |
453 |
tcatgtaca |
461 |
Q |
| |
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||||||||| |
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| T |
2003921 |
tcatgtaca |
2003913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 2010639 - 2010349
Alignment:
| Q |
17 |
tgtccactttattatgtgatgaaaatagaaaaaatatattgcaataaatatattgtaacacaagtaataaatacttaaacctcttatagcatgtttggtt |
116 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| | |
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| T |
2010639 |
tgtctactttattatgtgatgaaaatagaaaaaatatattgcaataa-tatattgtaacacaagtaataaatacttacaccttttatagcatgtttggct |
2010541 |
T |
|
| Q |
117 |
agtggttaccgtccaaattaccaatcttgtgttcggatgctgatttcaccacaattttaataagctatatatttaagcttcacactaaacacacggttgc |
216 |
Q |
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||||||||| ||||||||||||||||||| ||| |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2010540 |
agtggttacagtccaaattaccaatcttgcgtttcgatgttgattttatcacaattttaataagctatatatttaagcttcacactaaacacacggttgc |
2010441 |
T |
|
| Q |
217 |
gttcacaccacggtgaaccaaacaccgacttaaccatttaatgtaaagttcgatctttcatatatgcataaggaaacattagaaaaatcata |
308 |
Q |
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||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2010440 |
gttcacaccaccgtgaaccaaacaccggcttaaccattttgtgtaaagttcgatctttcacatatgcataaggaaacattagaaaaatcata |
2010349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 307 - 461
Target Start/End: Complemental strand, 2010067 - 2009913
Alignment:
| Q |
307 |
tataatatattcacgactcattcaatttctcttatatgaaatttatggtgtaaaatatatatttggattcttgtacccacacataaaatcatttgaattg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2010067 |
tataatatattcacgactcattcaatttctcttataagaaagttatggtgtaaaatatatatttggattcttgtacccacacataaaatcatttgaattg |
2009968 |
T |
|
| Q |
407 |
attgagacttagtagtatattgctaataaaatcacatagtttctaatcatgtaca |
461 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2009967 |
attgagacttagtagtatattgctaataaaatcacatagtttctaatcatgtaca |
2009913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 34486157 - 34486211
Alignment:
| Q |
169 |
aattttaataagctatatatttaagcttcacactaaacacacggttgcgttcaca |
223 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||||| ||||| ||| |||||| |
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|
| T |
34486157 |
aatttcaataagctacatatttgagcttcacactaaacgcacggctgcattcaca |
34486211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 7179915 - 7179814
Alignment:
| Q |
126 |
cgtccaaattaccaatcttgtgttcggatgctgatttcaccacaattttaataagctatatatttaagcttcacactaaacacacggttgcgttcacacc |
225 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||| |||||| || |||||||||||| ||||| |||||||||||| |
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| T |
7179915 |
cgtccaaattaccaatctcgtgtttcgatgccgatttcactgcaattttaataagctacatatttgagtttcacactaaacgcacggatgcgttcacacc |
7179816 |
T |
|
| Q |
226 |
ac |
227 |
Q |
| |
|
|| |
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|
| T |
7179815 |
ac |
7179814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 29025053 - 29024952
Alignment:
| Q |
126 |
cgtccaaattaccaatcttgtgttcggatgctgatttcaccacaattttaataagctatatatttaagcttcacactaaacacacggttgcgttcacacc |
225 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||||| |
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| T |
29025053 |
cgtccaaattatcaatcttgtgtttcgatattgatttcaccataattttaataaactatatattcgagcttcacactaaacgcacggttgcattcacacc |
29024954 |
T |
|
| Q |
226 |
ac |
227 |
Q |
| |
|
|| |
|
|
| T |
29024953 |
ac |
29024952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 9516 - 9634
Alignment:
| Q |
126 |
cgtccaaattaccaatcttgtgttcggatgctgatttcaccacaattttaataagctatatatttaagcttcacactaaacacacggttgcgttcacacc |
225 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||| || | |||||||||||||||| |||||| || ||||||| ||| ||||| ||| |||||||| |
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| T |
9516 |
cgtccaaattaccaatcccgtgtttcgatgccgattacatcgcaattttaataagctacatatttgagtttcacacaaaaagcacggctgcattcacacc |
9615 |
T |
|
| Q |
226 |
a-cggtgaaccaaacaccg |
243 |
Q |
| |
|
| || || ||||||||||| |
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| T |
9616 |
accgctgtaccaaacaccg |
9634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 16798 - 16900
Alignment:
| Q |
126 |
cgtccaaattaccaatcttgtgttcggatgctgatttcaccacaattttaataagctatatatttaagcttcacactaaacacacggttgcgttcacacc |
225 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||||||| |||| ||||||||||| ||||| |||||||||||||||| | || ||| |||||||| |
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| T |
16798 |
cgtccaaattaccaatctcacgtttagatgtcgatttcaccgcaatgttaataagctacttatttgagcttcacactaaacaaatggctgcattcacacc |
16897 |
T |
|
| Q |
226 |
acg |
228 |
Q |
| |
|
||| |
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|
| T |
16898 |
acg |
16900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 816 - 918
Alignment:
| Q |
126 |
cgtccaaattaccaatcttgtgttcggatgctgatttcaccacaattttaataagctatatatttaagcttcacactaaacacacggttgcgttcacacc |
225 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||||||| |||| ||||||||||| ||||| |||||||||||||||| | || ||| |||||||| |
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|
| T |
816 |
cgtccaaattaccaatctcacgtttcgatgtcgatttcaccgcaatgttaataagctacttatttgagcttcacactaaacaaatggctgcattcacacc |
915 |
T |
|
| Q |
226 |
acg |
228 |
Q |
| |
|
||| |
|
|
| T |
916 |
acg |
918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 25931381 - 25931296
Alignment:
| Q |
162 |
tcaccacaattttaataagctatatatttaagcttcacactaaacacacggttgcgttcacacca-cggtgaaccaaacaccgact |
246 |
Q |
| |
|
||||| |||||||| ||||||| ||||| || ||||||||||||||| || | |||| |||||| || || |||||||||||||| |
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|
| T |
25931381 |
tcaccgcaattttattaagctacctatttgagtttcacactaaacacaaggctacgtttacaccaccgttgcaccaaacaccgact |
25931296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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