View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4495_low_5 (Length: 340)
Name: NF4495_low_5
Description: NF4495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4495_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 526884 - 526711
Alignment:
| Q |
1 |
taatgtatttgacagtcacagttacggtcacttaattggaaaagttaatgactatgcaggacagtaactcagtaaggtactaacaatgttnnnnnnntaa |
100 |
Q |
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| T |
526884 |
taatgtatttgacagtcacagttacggtcacttaattggaaaagttaatgactatgcaggacagtaactcagtaaggtactaacaatgttcaaaaaataa |
526785 |
T |
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| Q |
101 |
gaataaaatattcattctatgattatcaatttaatctatcattgagttgagtcaactagaaacagacgtagaac |
174 |
Q |
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| T |
526784 |
gaataaaatattcattctatgattatcaatttaatctatcattgagttgagtcaactagaaacagacgtagaac |
526711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 210 - 340
Target Start/End: Complemental strand, 526675 - 526545
Alignment:
| Q |
210 |
gttcagcttcaagtttaatcatcgtagaataatgttctctctgagtttgtttttatgttaagaaaaagttagttatcacctgtttggagatgactagtgc |
309 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
526675 |
gttcatcttcaagtttaatcatcgtagaataatgttctctctgagtttgtttttatgttaagaaaaagttagttatcacctgtttggagatgactagtgc |
526576 |
T |
|
| Q |
310 |
aataaatcaactgcttttttcttactatcac |
340 |
Q |
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| T |
526575 |
aataaatcaaccgcttttttcttactatcac |
526545 |
T |
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