View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4495_low_8 (Length: 264)

Name: NF4495_low_8
Description: NF4495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4495_low_8
NF4495_low_8
[»] chr7 (1 HSPs)
chr7 (61-227)||(9238024-9238191)
[»] chr6 (5 HSPs)
chr6 (61-227)||(14415928-14416096)
chr6 (61-200)||(14322946-14323086)
chr6 (61-232)||(11946717-11946887)
chr6 (86-230)||(14666695-14666841)
chr6 (165-218)||(17715760-17715813)
[»] chr8 (2 HSPs)
chr8 (61-217)||(28244677-28244834)
chr8 (179-216)||(45349374-45349411)
[»] scaffold0832 (1 HSPs)
scaffold0832 (61-227)||(4-172)
[»] chr3 (2 HSPs)
chr3 (61-220)||(13852150-13852307)
chr3 (86-231)||(1658664-1658811)
[»] scaffold0838 (1 HSPs)
scaffold0838 (61-200)||(1-141)
[»] chr5 (2 HSPs)
chr5 (86-216)||(31406255-31406386)
chr5 (86-231)||(24047019-24047167)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 61 - 227
Target Start/End: Original strand, 9238024 - 9238191
Alignment:
Q  61 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaatttttggtcaacaatagtcaaaataaaataaataagaaaagtatta 160  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  9238024 tacaagtattaaaagagtaacaagtacccatttattattcattcacgtgttaaattttttgtcaacaatagtcaaaataaaataaataaaaaaagtatta 9238123  T
Q  161 taaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcaca-agatctca 227  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9238124 taaactattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 9238191  T

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Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 14416096 - 14415928
Alignment:
Q  61 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 159  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  14416096 tacaagtattaaaagagtaacaagtacccattcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 14415997  T
Q  160 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcaca-agatctca 227  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14415996 ataaacaattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 14415928  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 14323086 - 14322946
Alignment:
Q  61 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 159  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  14323086 tacaagtattaaaagagtaacaagtacccattcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 14322987  T
Q  160 ataaaccattgagaaacacttttctctctcttccctcaaaa 200  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  14322986 ataaacaattgagaaacacttttctctctcttccctcaaaa 14322946  T

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Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 11946717 - 11946887
Alignment:
Q  61 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaatttt-tggtcaacaatagtcaaaataaaataaataagaaaagtatt 159  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  11946717 tacaagtattaaaagagtaacaagtacc-attcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaataaataaataaagtatt 11946815  T
Q  160 ataaacca-ttgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacaagatctcaattcc 232  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  | |||||||||||||    
T  11946816 ataaaccatttgagaaacacttttctctctcttccctcaaaaatcacctttctctct--cgagatctcaattcc 11946887  T

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Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 14666695 - 14666841
Alignment:
Q  86 acccattgtttattcattcacgtgttaaat-ttttggtcaacaatagtcaaaataaaataaataagaaaagtattataaaccattgagaaacacttttct 184  Q
    |||||||  ||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||| |||||| |||||| ||||| ||||||||||||||    
T  14666695 acccattcattattcattcacgtgttaaaaattttagtcaacaatagtcaaaataaaataagtaaaaaaagtgttataagccattcagaaacacttttct 14666794  T
Q  185 ctctcttccctcaaaaatcacttttctctctca-caagatctcaatt 230  Q
    ||||||| ||| ||||||||||||||||||||| | |||||||||||    
T  14666795 ctctcttacctaaaaaatcacttttctctctcaccgagatctcaatt 14666841  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 17715760 - 17715813
Alignment:
Q  165 ccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcac 218  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  17715760 ccattgagaaacacttttctctctcttccgtcaaaaatctcttttctctctcac 17715813  T

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Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 28244677 - 28244834
Alignment:
Q  61 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaatttt-tggtcaacaatagtcaaaataaaataaataagaaaagtatt 159  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  28244677 tacaagtattaaaagagtaacaagtacccattcattattcattcacgtgttaaattttttggtcaacaataatcaaaataaaataaataaaaaaagtatt 28244776  T
Q  160 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28244777 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctca 28244834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 45349374 - 45349411
Alignment:
Q  179 ttttctctctcttccctcaaaaatcacttttctctctc 216  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45349374 ttttctctctcttccctcaaaaatcacttttctctctc 45349411  T

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Target: scaffold0832 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 172 - 4
Alignment:
Q  61 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 159  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  172 tacaagtattaaaagagtaacaagtacccattcattattcattcaagtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 73  T
Q  160 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcaca-agatctca 227  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  72 ataaacaattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 4  T

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Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 13852307 - 13852150
Alignment:
Q  61 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 159  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||   |||||||    
T  13852307 tacaagtattaaaagagtaacaagtaccgattcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaacaaaaaa---aagtatt 13852211  T
Q  160 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13852210 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacaa 13852150  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 1658811 - 1658664
Alignment:
Q  86 acccattgtttattcattcacgtgttaaatt-tttggtcaacaatagtcaaaataaaataaataagaaaagtattataaaccattgagaaacacttttct 184  Q
    |||||||  |||||||||||| |||||||   ||| |||||||||||||||||||||| || ||| |||||| |||||| | ||||||||||||||||||    
T  1658811 acccattcattattcattcacatgttaaaaaatttagtcaacaatagtcaaaataaaaaaagtaaaaaaagtgttataagcaattgagaaacacttttct 1658712  T
Q  185 ctctcttccctcaaaaatcacttttctctctca-caagatctcaattc 231  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  1658711 ctctcttccctcaaaaatcacttttctctctcaccgagatctcaattc 1658664  T

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Target: scaffold0838 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 141 - 1
Alignment:
Q  61 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 159  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  141 tacaagtattaaaagagtaacaagtacccattcattattcattcaagtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 42  T
Q  160 ataaaccattgagaaacacttttctctctcttccctcaaaa 200  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  41 ataaacaattgagaaacacttttctctctcttccctcaaaa 1  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 31406255 - 31406386
Alignment:
Q  86 acccattgtttattcattcacgtgttaaat-ttttggtcaacaatagtcaaaataaaataaataagaaaagtattataaaccattgagaaacacttttct 184  Q
    |||||||  ||||||||||||||||||||  |||| ||||||||||||||||| ||||||  ||| |||||| ||||||  |||||||||||||||||||    
T  31406255 acccattcattattcattcacgtgttaaaaattttagtcaacaatagtcaaaacaaaataggtaaaaaaagtgttataagacattgagaaacacttttct 31406354  T
Q  185 ctctcttccctcaaaaatcacttttctctctc 216  Q
    ||||||||||||||||| ||||||||||||||    
T  31406355 ctctcttccctcaaaaaacacttttctctctc 31406386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 24047167 - 24047019
Alignment:
Q  86 acccattgtttattcattcacgtgttaaat-ttttggtcaacaatagtcaaaataaaataaataagaaaa-gtattataaaccattgagaaacacttttc 183  Q
    |||||||  ||||| ||||||||||||||  |||| || ||||||||||||| |||||||| ||| |||| || |||||| | |||||||||||||||||    
T  24047167 acccattcattatttattcacgtgttaaaaattttagttaacaatagtcaaattaaaataagtaaaaaaatgtgttataagctattgagaaacacttttc 24047068  T
Q  184 tctctcttccctcaaaaatcacttttctctctca-caagatctcaattc 231  Q
    |||||||||||||||||||||||||||||||| | | ||||||||||||    
T  24047067 tctctcttccctcaaaaatcacttttctctcttaccgagatctcaattc 24047019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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